RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 AGPAT3Q9NRZ7 376 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 BTBD7Q9P203 1132 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 NEU2Q9Y3R4 380 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 STON1Q9Y6Q2 735 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 GTF2H1P32780 548 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 ITGA8P53708 1063 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 KBTBD12Q3ZCT8 623 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 FASTKD5Q7L8L6 764 aaKnown RBP10.22□□□□□ -0.77
COL6A3-201ENST00000295550 CATSPER4Q7RTX7 472 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 STK39Q9UEW8 545 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 SPATA31A5Q5VU36 1347 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 SPATA31A7Q8IWB4 1347 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 TBKBP1A7MCY6 615 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 KLHL12Q53G59 568 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 IKBIPQ70UQ0 350 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 SH3RF1Q7Z6J0 888 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 TRIM62Q9BVG3 475 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 TRPC7Q9HCX4 862 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 ALG6Q9Y672 507 aa10.22□□□□□ -0.77
COL6A3-201ENST00000295550 BCL10O95999 233 aa10.21□□□□□ -0.77
COL6A3-201ENST00000295550 SOAT1P35610 550 aa10.21□□□□□ -0.77
COL6A3-201ENST00000295550 XRRA1Q6P2D8 792 aa10.21□□□□□ -0.77
COL6A3-201ENST00000295550 CPA5Q8WXQ8 436 aa10.21□□□□□ -0.77
COL6A3-201ENST00000295550 ANKRD27Q96NW4 1050 aa10.21□□□□□ -0.77
COL6A3-201ENST00000295550 RERGLQ9H628 205 aa10.21□□□□□ -0.77
COL6A3-201ENST00000295550 CYP51A1Q16850 503 aa10.21□□□□□ -0.77
COL6A3-201ENST00000295550 DPP10Q8N608 796 aa10.21□□□□□ -0.77
COL6A3-201ENST00000295550 FAM45AQ8TCE6 357 aa10.21□□□□□ -0.77
COL6A3-201ENST00000295550 SPATA16Q9BXB7 569 aa10.21□□□□□ -0.77
COL6A3-201ENST00000295550 HOXC10Q9NYD6 342 aa10.21□□□□□ -0.77
COL6A3-201ENST00000295550 ARHGAP20Q9P2F6 1191 aa10.21□□□□□ -0.77
COL6A3-201ENST00000295550 ZNF862O60290 1169 aa10.21□□□□□ -0.77
COL6A3-201ENST00000295550 MFN2O95140 757 aa10.21□□□□□ -0.77
COL6A3-201ENST00000295550 MLNP12872 115 aa10.21□□□□□ -0.77
COL6A3-201ENST00000295550 TTC23LQ6PF05 361 aa10.21□□□□□ -0.77
COL6A3-201ENST00000295550 ZNF662Q6ZS27 426 aa10.21□□□□□ -0.77
COL6A3-201ENST00000295550 CHSY1Q86X52 802 aa10.21□□□□□ -0.77
COL6A3-201ENST00000295550 EHD4Q9H223 541 aa10.21□□□□□ -0.77
COL6A3-201ENST00000295550 RIOX1Q9H6W3 641 aa10.21□□□□□ -0.77
COL6A3-201ENST00000295550 ATAD3AQ9NVI7 634 aa10.21□□□□□ -0.77
COL6A3-201ENST00000295550 PCDHB2Q9Y5E7 798 aa10.21□□□□□ -0.77
COL6A3-201ENST00000295550 DUOXA2Q1HG44 320 aa10.21□□□□□ -0.77
COL6A3-201ENST00000295550 SWSAP1Q6NVH7 229 aa10.21□□□□□ -0.77
COL6A3-201ENST00000295550 CHMP1BQ7LBR1 199 aa10.21□□□□□ -0.77
COL6A3-201ENST00000295550 ZFRQ96KR1 1074 aaKnown RBP10.21□□□□□ -0.77
COL6A3-201ENST00000295550 GOLPH3Q9H4A6 298 aa10.21□□□□□ -0.77
COL6A3-201ENST00000295550 IREB2P48200 963 aaKnown RBP10.21□□□□□ -0.78
COL6A3-201ENST00000295550 SEC24CP53992 1094 aa10.21□□□□□ -0.78
COL6A3-201ENST00000295550 ATP12AP54707 1039 aa10.21□□□□□ -0.78
COL6A3-201ENST00000295550 TAB1Q15750 504 aa10.21□□□□□ -0.78
COL6A3-201ENST00000295550 MCEEQ96PE7 176 aa10.21□□□□□ -0.78
COL6A3-201ENST00000295550 SRPK1Q96SB4 655 aaKnown RBP10.21□□□□□ -0.78
COL6A3-201ENST00000295550 LATS2Q9NRM7 1088 aa10.21□□□□□ -0.78
COL6A3-201ENST00000295550 INTS13Q9NVM9 706 aa10.21□□□□□ -0.78
COL6A3-201ENST00000295550 POLIQ9UNA4 740 aa10.21□□□□□ -0.78
COL6A3-201ENST00000295550 GMEB1Q9Y692 573 aa10.21□□□□□ -0.78
COL6A3-201ENST00000295550 EVPLLA8MZ36 301 aa10.21□□□□□ -0.78
COL6A3-201ENST00000295550 EXTL3O43909 919 aa10.21□□□□□ -0.78
COL6A3-201ENST00000295550 LCP1P13796 627 aa10.21□□□□□ -0.78
COL6A3-201ENST00000295550 SREBF1P36956 1147 aa10.21□□□□□ -0.78
COL6A3-201ENST00000295550 VPS72Q15906 364 aa10.21□□□□□ -0.78
COL6A3-201ENST00000295550 NFIL3Q16649 462 aa10.21□□□□□ -0.78
COL6A3-201ENST00000295550 DALRD3Q5D0E6 543 aaKnown RBP10.21□□□□□ -0.78
COL6A3-201ENST00000295550 ZNF513Q8N8E2 541 aaPredicted RBP10.21□□□□□ -0.78
COL6A3-201ENST00000295550 MARCH10Q8NA82 808 aaPredicted RBP10.21□□□□□ -0.78
COL6A3-201ENST00000295550 SLC30A5Q8TAD4 765 aa10.21□□□□□ -0.78
COL6A3-201ENST00000295550 GDF3Q9NR23 364 aa10.21□□□□□ -0.78
COL6A3-201ENST00000295550 PRDM4Q9UKN5 801 aa10.21□□□□□ -0.78
COL6A3-201ENST00000295550 SMIM31A0A1B0GVY4 71 aa10.21□□□□□ -0.78
COL6A3-201ENST00000295550 SERPINB5P36952 375 aa10.21□□□□□ -0.78
COL6A3-201ENST00000295550 GIT2Q14161 759 aa10.21□□□□□ -0.78
COL6A3-201ENST00000295550 C18orf8Q96DM3 657 aa10.21□□□□□ -0.78
COL6A3-201ENST00000295550 GLI1P08151 1106 aa10.21□□□□□ -0.78
COL6A3-201ENST00000295550 LPCAT2Q7L5N7 544 aa10.21□□□□□ -0.78
COL6A3-201ENST00000295550 SLC13A5Q86YT5 568 aaPredicted RBP10.21□□□□□ -0.78
COL6A3-201ENST00000295550 TMEM117Q9H0C3 514 aa10.21□□□□□ -0.78
COL6A3-201ENST00000295550 GZMAP12544 262 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 HSD17B4P51659 736 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 ALDH6A1Q02252 535 aaKnown RBP10.2□□□□□ -0.78
COL6A3-201ENST00000295550 EEPD1Q7L9B9 569 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 MAGEB18Q96M61 343 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 WDR35Q9P2L0 1181 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 PRR12Q9ULL5 1215 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 HMGB3O15347 200 aaKnown RBP10.2□□□□□ -0.78
COL6A3-201ENST00000295550 KRT6AP02538 564 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 EMC2Q15006 297 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 ACCSLQ4AC99 568 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 SPDYCQ5MJ68 293 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 KLHL24Q6TFL4 600 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 THAP2Q9H0W7 228 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 TOPORSQ9NS56 1045 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-201ENST00000295550 SNX13Q9Y5W8 968 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-201ENST00000295550 KPNA4O00629 521 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-201ENST00000295550 ATP9BO43861 1147 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 FAM200BP0CF97 657 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 DCTN2Q13561 401 aaKnown RBP10.2□□□□□ -0.78
COL6A3-201ENST00000295550 C16orf72Q14CZ0 275 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 THNSL1Q8IYQ7 743 aa10.2□□□□□ -0.78
COL6A3-201ENST00000295550 BEST2Q8NFU1 509 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms