RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 GRM5P41594 1212 aa21■□□□□ 0.95
VPS53-201ENST00000291074 WDR4P57081 412 aaKnown RBP21■□□□□ 0.95
VPS53-201ENST00000291074 PMF1Q6P1K2 205 aa21■□□□□ 0.95
VPS53-201ENST00000291074 OR6J1Q8NGC5 347 aa21■□□□□ 0.95
VPS53-201ENST00000291074 C18orf25Q96B23 403 aaPredicted RBP21■□□□□ 0.95
VPS53-201ENST00000291074 SLC40A1Q9NP59 571 aa21■□□□□ 0.95
VPS53-201ENST00000291074 HAUS2Q9NVX0 235 aa21■□□□□ 0.95
VPS53-201ENST00000291074 MCF2LO15068 1137 aa21■□□□□ 0.95
VPS53-201ENST00000291074 KRT15P19012 456 aa21■□□□□ 0.95
VPS53-201ENST00000291074 FOXN2P32314 431 aa21■□□□□ 0.95
VPS53-201ENST00000291074 KYAT1Q16773 422 aa21■□□□□ 0.95
VPS53-201ENST00000291074 ARHGEF18Q6ZSZ5 1173 aa21■□□□□ 0.95
VPS53-201ENST00000291074 TTC30AQ86WT1 665 aa21■□□□□ 0.95
VPS53-201ENST00000291074 BRI3BPQ8WY22 251 aa21■□□□□ 0.95
VPS53-201ENST00000291074 TRABDQ9H4I3 376 aa21■□□□□ 0.95
VPS53-201ENST00000291074 GBA2Q9HCG7 927 aaPredicted RBP21■□□□□ 0.95
VPS53-201ENST00000291074 ACTL7BQ9Y614 415 aa21■□□□□ 0.95
VPS53-201ENST00000291074 FAM47DPA6NHR8 397 aa20.99■□□□□ 0.95
VPS53-201ENST00000291074 HOXA11P31270 313 aaPredicted RBP20.99■□□□□ 0.95
VPS53-201ENST00000291074 PCK1P35558 622 aa20.99■□□□□ 0.95
VPS53-201ENST00000291074 BASP1P80723 227 aaKnown RBP20.99■□□□□ 0.95
VPS53-201ENST00000291074 SMYD5Q6GMV2 418 aa20.99■□□□□ 0.95
VPS53-201ENST00000291074 GPR142Q7Z601 462 aa20.99■□□□□ 0.95
VPS53-201ENST00000291074 SYT17Q9BSW7 474 aa20.99■□□□□ 0.95
VPS53-201ENST00000291074 DPYSL3Q14195 570 aa20.99■□□□□ 0.95
VPS53-201ENST00000291074 FAM133BQ5BKY9 247 aaKnown RBP20.99■□□□□ 0.95
VPS53-201ENST00000291074 CGB2Q6NT52 195 aa20.99■□□□□ 0.95
VPS53-201ENST00000291074 SCYL2Q6P3W7 929 aa20.99■□□□□ 0.95
VPS53-201ENST00000291074 C1orf228Q6PIY5 440 aa20.99■□□□□ 0.95
VPS53-201ENST00000291074 PAXIP1Q6ZW49 1069 aaPredicted RBP20.99■□□□□ 0.95
VPS53-201ENST00000291074 TRPM8Q7Z2W7 1104 aa20.99■□□□□ 0.95
VPS53-201ENST00000291074 PCGF5Q86SE9 256 aa20.99■□□□□ 0.95
VPS53-201ENST00000291074 MAML3Q96JK9 1138 aa20.99■□□□□ 0.95
VPS53-201ENST00000291074 RSAD1Q9HA92 442 aa20.99■□□□□ 0.95
VPS53-201ENST00000291074 NGRNQ9NPE2 291 aaKnown RBP20.99■□□□□ 0.95
VPS53-201ENST00000291074 UBN1Q9NPG3 1134 aa20.99■□□□□ 0.95
VPS53-201ENST00000291074 GJD2Q9UKL4 321 aa20.99■□□□□ 0.95
VPS53-201ENST00000291074 USP15Q9Y4E8 981 aaPredicted RBP20.99■□□□□ 0.95
VPS53-201ENST00000291074 CENPFP49454 3210 aa20.98■□□□□ 0.95
VPS53-201ENST00000291074 RALGAPA2Q2PPJ7 1873 aa20.98■□□□□ 0.95
VPS53-201ENST00000291074 A0A1W2PPM1 405 aa20.98■□□□□ 0.95
VPS53-201ENST00000291074 MAP3K6O95382 1288 aa20.98■□□□□ 0.95
VPS53-201ENST00000291074 ARL4CP56559 192 aa20.98■□□□□ 0.95
VPS53-201ENST00000291074 ACAP1Q15027 740 aa20.98■□□□□ 0.95
VPS53-201ENST00000291074 CCDC14Q49A88 953 aa20.98■□□□□ 0.95
VPS53-201ENST00000291074 DUSP28Q4G0W2 176 aa20.98■□□□□ 0.95
VPS53-201ENST00000291074 ZC3H12AQ5D1E8 599 aaKnown RBP20.98■□□□□ 0.95
VPS53-201ENST00000291074 TDRPQ86YL5 185 aa20.98■□□□□ 0.95
VPS53-201ENST00000291074 PYROXD1Q8WU10 500 aa20.98■□□□□ 0.95
VPS53-201ENST00000291074 GTF3C2Q8WUA4 911 aaPredicted RBP20.98■□□□□ 0.95
VPS53-201ENST00000291074 P3H4Q92791 437 aa20.98■□□□□ 0.95
VPS53-201ENST00000291074 FRMD8P1Q9BZ68 369 aaPredicted RBP20.98■□□□□ 0.95
VPS53-201ENST00000291074 STAU1O95793 577 aaKnown RBP20.98■□□□□ 0.95
VPS53-201ENST00000291074 GHRP10912 638 aa20.98■□□□□ 0.95
VPS53-201ENST00000291074 BBS9Q3SYG4 887 aa20.98■□□□□ 0.95
VPS53-201ENST00000291074 SCUBE3Q8IX30 993 aa20.98■□□□□ 0.95
VPS53-201ENST00000291074 FBXO36Q8NEA4 188 aa20.98■□□□□ 0.95
VPS53-201ENST00000291074 LRRN4Q8WUT4 740 aa20.98■□□□□ 0.95
VPS53-201ENST00000291074 MAGEB18Q96M61 343 aa20.98■□□□□ 0.95
VPS53-201ENST00000291074 OSMRQ99650 979 aa20.98■□□□□ 0.95
VPS53-201ENST00000291074 MAK16Q9BXY0 300 aaKnown RBP20.98■□□□□ 0.95
VPS53-201ENST00000291074 B3GNT5Q9BYG0 378 aa20.98■□□□□ 0.95
VPS53-201ENST00000291074 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.98■□□□□ 0.95
VPS53-201ENST00000291074 XPO7Q9UIA9 1087 aaKnown RBP20.98■□□□□ 0.95
VPS53-201ENST00000291074 PRPSAP2O60256 369 aa20.97■□□□□ 0.95
VPS53-201ENST00000291074 GABBR2O75899 941 aa20.97■□□□□ 0.95
VPS53-201ENST00000291074 DARS2Q6PI48 645 aaKnown RBP20.97■□□□□ 0.95
VPS53-201ENST00000291074 PPP1R21Q6ZMI0 780 aa20.97■□□□□ 0.95
VPS53-201ENST00000291074 FAM47EQ6ZV65 393 aa20.97■□□□□ 0.95
VPS53-201ENST00000291074 CATSPER4Q7RTX7 472 aa20.97■□□□□ 0.95
VPS53-201ENST00000291074 SPOCK2Q92563 424 aa20.97■□□□□ 0.95
VPS53-201ENST00000291074 APOL6Q9BWW8 343 aa20.97■□□□□ 0.95
VPS53-201ENST00000291074 ADAMTS10Q9H324 1103 aa20.97■□□□□ 0.95
VPS53-201ENST00000291074 DPEP3Q9H4B8 488 aa20.97■□□□□ 0.95
VPS53-201ENST00000291074 RABGEF1Q9UJ41 708 aa20.97■□□□□ 0.95
VPS53-201ENST00000291074 STRNO43815 780 aa20.97■□□□□ 0.95
VPS53-201ENST00000291074 RASSF9O75901 435 aa20.97■□□□□ 0.95
VPS53-201ENST00000291074 ENDOD1O94919 500 aa20.97■□□□□ 0.95
VPS53-201ENST00000291074 TAC1P20366 129 aa20.97■□□□□ 0.95
VPS53-201ENST00000291074 ROR1Q01973 937 aa20.97■□□□□ 0.95
VPS53-201ENST00000291074 ACVR2BQ13705 512 aa20.97■□□□□ 0.95
VPS53-201ENST00000291074 NOMO1Q15155 1222 aa20.97■□□□□ 0.95
VPS53-201ENST00000291074 OLFML1Q6UWY5 402 aa20.97■□□□□ 0.95
VPS53-201ENST00000291074 ZNF410Q86VK4 478 aa20.97■□□□□ 0.95
VPS53-201ENST00000291074 NXF3Q9H4D5 531 aaKnown RBP20.97■□□□□ 0.95
VPS53-201ENST00000291074 DOCK3Q8IZD9 2030 aa20.97■□□□□ 0.95
VPS53-201ENST00000291074 DGKDQ16760 1214 aa20.96■□□□□ 0.95
VPS53-201ENST00000291074 CA9Q16790 459 aa20.96■□□□□ 0.95
VPS53-201ENST00000291074 SPATA21Q7Z572 469 aa20.96■□□□□ 0.95
VPS53-201ENST00000291074 ZNF467Q7Z7K2 595 aaPredicted RBP20.96■□□□□ 0.95
VPS53-201ENST00000291074 NPLOC4Q8TAT6 608 aa20.96■□□□□ 0.95
VPS53-201ENST00000291074 SNX27Q96L92 541 aa20.96■□□□□ 0.95
VPS53-201ENST00000291074 MIS12Q9H081 205 aa20.96■□□□□ 0.95
VPS53-201ENST00000291074 GRID1Q9ULK0 1009 aa20.96■□□□□ 0.95
VPS53-201ENST00000291074 CLEC11AQ9Y240 323 aa20.96■□□□□ 0.95
VPS53-201ENST00000291074 TRIP12Q14669 1992 aaPredicted RBP20.96■□□□□ 0.95
VPS53-201ENST00000291074 TFE3P19532 575 aaPredicted RBP20.96■□□□□ 0.95
VPS53-201ENST00000291074 RPA3P35244 121 aaPredicted RBP20.96■□□□□ 0.95
VPS53-201ENST00000291074 KRT81Q14533 505 aa20.96■□□□□ 0.95
VPS53-201ENST00000291074 DCAF4L1Q3SXM0 396 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms