RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 MED15Q96RN5 788 aa24.33■■□□□ 1.49
LSM4-201ENST00000252816 NELL2Q99435 816 aa24.33■■□□□ 1.49
LSM4-201ENST00000252816 FAM83CQ9BQN1 747 aa24.33■■□□□ 1.49
LSM4-201ENST00000252816 SRRTQ9BXP5 876 aaKnown RBP24.33■■□□□ 1.49
LSM4-201ENST00000252816 THG1LQ9NWX6 298 aaKnown RBP24.33■■□□□ 1.49
LSM4-201ENST00000252816 NDRG2Q9UN36 371 aaKnown RBP24.33■■□□□ 1.49
LSM4-201ENST00000252816 KIF26AQ9ULI4 1882 aaPredicted RBP24.32■■□□□ 1.48
LSM4-201ENST00000252816 MAN2B1O00754 1011 aa24.32■■□□□ 1.48
LSM4-201ENST00000252816 FAM200BP0CF97 657 aa24.32■■□□□ 1.48
LSM4-201ENST00000252816 PPP3CCP48454 512 aa24.32■■□□□ 1.48
LSM4-201ENST00000252816 MLLT6P55198 1093 aaPredicted RBP24.32■■□□□ 1.48
LSM4-201ENST00000252816 ZNF77Q15935 545 aa24.32■■□□□ 1.48
LSM4-201ENST00000252816 TRIM68Q6AZZ1 485 aa24.32■■□□□ 1.48
LSM4-201ENST00000252816 FAM3CQ92520 227 aa24.32■■□□□ 1.48
LSM4-201ENST00000252816 FBXO32Q969P5 355 aa24.32■■□□□ 1.48
LSM4-201ENST00000252816 CLDN23Q96B33 292 aa24.32■■□□□ 1.48
LSM4-201ENST00000252816 SLITRK1Q96PX8 696 aa24.32■■□□□ 1.48
LSM4-201ENST00000252816 MRPS17Q9Y2R5 130 aaKnown RBP24.32■■□□□ 1.48
LSM4-201ENST00000252816 MIA3Q5JRA6 1907 aa24.31■■□□□ 1.48
LSM4-201ENST00000252816 PMM2O15305 246 aa24.31■■□□□ 1.48
LSM4-201ENST00000252816 ABL1P00519 1130 aa24.31■■□□□ 1.48
LSM4-201ENST00000252816 KPNA1P52294 538 aaPredicted RBP24.31■■□□□ 1.48
LSM4-201ENST00000252816 RAD23BP54727 409 aa24.31■■□□□ 1.48
LSM4-201ENST00000252816 ZXDBP98169 803 aa24.31■■□□□ 1.48
LSM4-201ENST00000252816 USP4Q13107 963 aa24.31■■□□□ 1.48
LSM4-201ENST00000252816 CUL2Q13617 745 aa24.31■■□□□ 1.48
LSM4-201ENST00000252816 ANGPT1Q15389 498 aa24.31■■□□□ 1.48
LSM4-201ENST00000252816 CLEC20AQ6ZU45 233 aa24.31■■□□□ 1.48
LSM4-201ENST00000252816 TRIM59Q8IWR1 403 aa24.31■■□□□ 1.48
LSM4-201ENST00000252816 TTC39CQ8N584 583 aa24.31■■□□□ 1.48
LSM4-201ENST00000252816 SLC4A11Q8NBS3 891 aa24.31■■□□□ 1.48
LSM4-201ENST00000252816 ATOH1Q92858 354 aaPredicted RBP24.31■■□□□ 1.48
LSM4-201ENST00000252816 RNF38Q9H0F5 515 aa24.31■■□□□ 1.48
LSM4-201ENST00000252816 HPS4Q9NQG7 708 aa24.31■■□□□ 1.48
LSM4-201ENST00000252816 RWDD2AQ9UIY3 292 aa24.31■■□□□ 1.48
LSM4-201ENST00000252816 ARHGAP26Q9UNA1 814 aa24.31■■□□□ 1.48
LSM4-201ENST00000252816 FAM92AA1XBS5 289 aa24.3■■□□□ 1.48
LSM4-201ENST00000252816 GNA14O95837 355 aa24.3■■□□□ 1.48
LSM4-201ENST00000252816 OAS1P00973 400 aaKnown RBP24.3■■□□□ 1.48
LSM4-201ENST00000252816 PFKLP17858 780 aa24.3■■□□□ 1.48
LSM4-201ENST00000252816 TRIM21P19474 475 aaKnown RBP24.3■■□□□ 1.48
LSM4-201ENST00000252816 CTHP32929 405 aa24.3■■□□□ 1.48
LSM4-201ENST00000252816 MARSP56192 900 aaKnown RBP24.3■■□□□ 1.48
LSM4-201ENST00000252816 LRMPQ12912 555 aa24.3■■□□□ 1.48
LSM4-201ENST00000252816 MTF1Q14872 753 aa24.3■■□□□ 1.48
LSM4-201ENST00000252816 PPP1R26Q5T8A7 1209 aaPredicted RBP24.3■■□□□ 1.48
LSM4-201ENST00000252816 TXNDC11Q6PKC3 985 aa24.3■■□□□ 1.48
LSM4-201ENST00000252816 GPRIN1Q7Z2K8 1008 aa24.3■■□□□ 1.48
LSM4-201ENST00000252816 TTC16Q8NEE8 873 aa24.3■■□□□ 1.48
LSM4-201ENST00000252816 SH3RF2Q8TEC5 729 aa24.3■■□□□ 1.48
LSM4-201ENST00000252816 TMEM176AQ96HP8 235 aa24.3■■□□□ 1.48
LSM4-201ENST00000252816 HEXIM2Q96MH2 286 aaKnown RBP24.3■■□□□ 1.48
LSM4-201ENST00000252816 IRF2BPLQ9H1B7 796 aa24.3■■□□□ 1.48
LSM4-201ENST00000252816 EBF3Q9H4W6 596 aa24.3■■□□□ 1.48
LSM4-201ENST00000252816 C8orf33Q9H7E9 229 aaPredicted RBP24.3■■□□□ 1.48
LSM4-201ENST00000252816 CHORDC1Q9UHD1 332 aaPredicted RBP24.3■■□□□ 1.48
LSM4-201ENST00000252816 PIEZO1Q92508 2521 aa24.29■■□□□ 1.48
LSM4-201ENST00000252816 OTOL1A6NHN0 477 aaPredicted RBP24.29■■□□□ 1.48
LSM4-201ENST00000252816 HHLA1C9JL84 531 aa24.29■■□□□ 1.48
LSM4-201ENST00000252816 SPECC1L-ADORA2AF8WAN1 911 aa24.29■■□□□ 1.48
LSM4-201ENST00000252816 OLFM2O95897 454 aa24.29■■□□□ 1.48
LSM4-201ENST00000252816 ARSAP15289 507 aa24.29■■□□□ 1.48
LSM4-201ENST00000252816 PGFP49763 221 aa24.29■■□□□ 1.48
LSM4-201ENST00000252816 PDE6CP51160 858 aa24.29■■□□□ 1.48
LSM4-201ENST00000252816 CC2D1AQ6P1N0 951 aaPredicted RBP24.29■■□□□ 1.48
LSM4-201ENST00000252816 LMO3Q8TAP4 145 aa24.29■■□□□ 1.48
LSM4-201ENST00000252816 OVCA2Q8WZ82 227 aa24.29■■□□□ 1.48
LSM4-201ENST00000252816 JAKMIP2Q96AA8 810 aa24.29■■□□□ 1.48
LSM4-201ENST00000252816 MSANTD3Q96H12 275 aa24.29■■□□□ 1.48
LSM4-201ENST00000252816 NUP62CLQ9H1M0 184 aa24.29■■□□□ 1.48
LSM4-201ENST00000252816 FAM124BQ9H5Z6 455 aaPredicted RBP24.29■■□□□ 1.48
LSM4-201ENST00000252816 COMMD8Q9NX08 183 aa24.29■■□□□ 1.48
LSM4-201ENST00000252816 GMIPQ9P107 970 aa24.29■■□□□ 1.48
LSM4-201ENST00000252816 ZDHHC11BP0C7U3 371 aa24.28■■□□□ 1.48
LSM4-201ENST00000252816 TCF3P15923 654 aa24.28■■□□□ 1.48
LSM4-201ENST00000252816 SLC7A9P82251 487 aa24.28■■□□□ 1.48
LSM4-201ENST00000252816 KCNH2Q12809 1159 aa24.28■■□□□ 1.48
LSM4-201ENST00000252816 RUNX3Q13761 415 aa24.28■■□□□ 1.48
LSM4-201ENST00000252816 ITPRIPL2Q3MIP1 535 aa24.28■■□□□ 1.48
LSM4-201ENST00000252816 RALGPS2Q86X27 583 aaPredicted RBP24.28■■□□□ 1.48
LSM4-201ENST00000252816 C1orf210Q8IVY1 113 aa24.28■■□□□ 1.48
LSM4-201ENST00000252816 UBR7Q8N806 425 aa24.28■■□□□ 1.48
LSM4-201ENST00000252816 MLKLQ8NB16 471 aa24.28■■□□□ 1.48
LSM4-201ENST00000252816 PDZD8Q8NEN9 1154 aa24.28■■□□□ 1.48
LSM4-201ENST00000252816 IPO9Q96P70 1041 aaKnown RBP24.28■■□□□ 1.48
LSM4-201ENST00000252816 CACNA1IQ9P0X4 2223 aa24.28■■□□□ 1.48
LSM4-201ENST00000252816 VPS13AQ96RL7 3174 aa24.28■■□□□ 1.48
LSM4-201ENST00000252816 NCAM2O15394 837 aa24.27■■□□□ 1.48
LSM4-201ENST00000252816 P4HA2O15460 535 aa24.27■■□□□ 1.48
LSM4-201ENST00000252816 FGFR1OPO95684 399 aaKnown RBP24.27■■□□□ 1.48
LSM4-201ENST00000252816 RPS9P46781 194 aaKnown RBP24.27■■□□□ 1.48
LSM4-201ENST00000252816 SNX30Q5VWJ9 437 aa24.27■■□□□ 1.48
LSM4-201ENST00000252816 MAML2Q8IZL2 1156 aaPredicted RBP24.27■■□□□ 1.48
LSM4-201ENST00000252816 OSCP1Q8WVF1 389 aa24.27■■□□□ 1.48
LSM4-201ENST00000252816 CHFRQ96EP1 664 aa24.27■■□□□ 1.48
LSM4-201ENST00000252816 DUSP16Q9BY84 665 aa24.27■■□□□ 1.48
LSM4-201ENST00000252816 DNAI2Q9GZS0 605 aa24.27■■□□□ 1.48
LSM4-201ENST00000252816 SMPD4Q9NXE4 827 aa24.27■■□□□ 1.48
LSM4-201ENST00000252816 UTP18Q9Y5J1 556 aaKnown RBP eCLIP24.27■■□□□ 1.48
LSM4-201ENST00000252816 CPQQ9Y646 472 aa24.27■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms