RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 LNPEPQ9UIQ6 1025 aa19.55■□□□□ 0.72
CPSF3-201ENST00000238112 SIX4Q9UIU6 781 aa19.55■□□□□ 0.72
CPSF3-201ENST00000238112 SSC5DA1L4H1 1573 aa19.55■□□□□ 0.72
CPSF3-201ENST00000238112 IGKV6-21A0A0C4DH24 114 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 TCRBV9S1A1TA0A576 114 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 KBTBD13C9JR72 458 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 KIF1CO43896 1103 aaKnown RBP19.54■□□□□ 0.72
CPSF3-201ENST00000238112 CALB2P22676 271 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 PCK1P35558 622 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 CDH6P55285 790 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 MMRN1Q13201 1228 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 KBTBD12Q3ZCT8 623 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 NPNTQ6UXI9 565 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 RIOX2Q8IUF8 465 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 IGDCC3Q8IVU1 814 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 C1orf127Q8N9H9 656 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 TMEM176AQ96HP8 235 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 APOPT1Q96IL0 206 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 TWNKQ96RR1 684 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 FZD8Q9H461 694 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.54■□□□□ 0.72
CPSF3-201ENST00000238112 DONSONQ9NYP3 566 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 NKX1-2Q9UD57 310 aaPredicted RBP19.54■□□□□ 0.72
CPSF3-201ENST00000238112 HMGXB4Q9UGU5 601 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 SUFUQ9UMX1 484 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP19.54■□□□□ 0.72
CPSF3-201ENST00000238112 ZBTB42B2RXF5 422 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 PEX11AO75192 247 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 SPAG6O75602 509 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 NFICP08651 508 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 PRKG1Q13976 671 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 NOMO1Q15155 1222 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 SH3D19Q5HYK7 790 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 WASHC2DQ5SRD0 308 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 BZW1Q7L1Q6 419 aaKnown RBP19.54■□□□□ 0.72
CPSF3-201ENST00000238112 TMEM192Q8IY95 271 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 TRAF3IP1Q8TDR0 691 aaPredicted RBP19.54■□□□□ 0.72
CPSF3-201ENST00000238112 STK32AQ8WU08 396 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 SLC44A1Q8WWI5 657 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 FAF2Q96CS3 445 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 ANKRD27Q96NW4 1050 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 NUDCD1Q96RS6 583 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 ELOVL4Q9GZR5 314 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 CDT1Q9H211 546 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 BTBD7Q9P203 1132 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.54■□□□□ 0.72
CPSF3-201ENST00000238112 LOC285556D6RIA3 1793 aa19.54■□□□□ 0.72
CPSF3-201ENST00000238112 E7ENQ6 273 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 H7C0C1 242 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 ITGB3P05106 788 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 GJB1P08034 283 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 GABRB2P47870 512 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 ATP5OP48047 213 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 ZNF143P52747 638 aaPredicted RBP19.53■□□□□ 0.72
CPSF3-201ENST00000238112 TFDP2Q14188 446 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 FAM47CQ5HY64 1035 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 NOL9Q5SY16 702 aaKnown RBP19.53■□□□□ 0.72
CPSF3-201ENST00000238112 SYCP2LQ5T4T6 812 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 DPH6Q7L8W6 267 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 PTPRN2Q92932 1015 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 FAXDC2Q96IV6 333 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 PEBP4Q96S96 227 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 GPR20Q99678 358 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 CILPO75339 1184 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 HAUS5O94927 633 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 ARFIP2P53365 341 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 FAAP100Q0VG06 881 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 TAF11Q15544 211 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 HSDL1Q3SXM5 330 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 TREML2Q5T2D2 321 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 LRRC6Q86X45 466 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 CHSY1Q86X52 802 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 TTC17Q96AE7 1141 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 SERAC1Q96JX3 654 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 HEXIM2Q96MH2 286 aaKnown RBP19.53■□□□□ 0.72
CPSF3-201ENST00000238112 FAM111AQ96PZ2 611 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 TUBB6Q9BUF5 446 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 HEY2Q9UBP5 337 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 TEX264Q9Y6I9 313 aa19.53■□□□□ 0.72
CPSF3-201ENST00000238112 CHADO15335 359 aa19.52■□□□□ 0.72
CPSF3-201ENST00000238112 GPD1P21695 349 aa19.52■□□□□ 0.72
CPSF3-201ENST00000238112 NEK3P51956 506 aa19.52■□□□□ 0.72
CPSF3-201ENST00000238112 KCNJ11Q14654 390 aa19.52■□□□□ 0.72
CPSF3-201ENST00000238112 CTC1Q2NKJ3 1217 aa19.52■□□□□ 0.72
CPSF3-201ENST00000238112 FBXO41Q8TF61 875 aa19.52■□□□□ 0.72
CPSF3-201ENST00000238112 TRAPPC12Q8WVT3 735 aa19.52■□□□□ 0.72
CPSF3-201ENST00000238112 CNPY3Q9BT09 278 aa19.52■□□□□ 0.72
CPSF3-201ENST00000238112 KANSL3Q9P2N6 904 aa19.52■□□□□ 0.72
CPSF3-201ENST00000238112 RPL26L1Q9UNX3 145 aaKnown RBP19.52■□□□□ 0.72
CPSF3-201ENST00000238112 TNFSF13BQ9Y275 285 aa19.52■□□□□ 0.72
CPSF3-201ENST00000238112 PRPSAP2O60256 369 aa19.52■□□□□ 0.71
CPSF3-201ENST00000238112 ARIH2O95376 493 aa19.52■□□□□ 0.71
CPSF3-201ENST00000238112 HMGCRP04035 888 aa19.52■□□□□ 0.71
CPSF3-201ENST00000238112 PYGBP11216 843 aa19.52■□□□□ 0.71
CPSF3-201ENST00000238112 P4HA1P13674 534 aa19.52■□□□□ 0.71
CPSF3-201ENST00000238112 GM2AP17900 193 aa19.52■□□□□ 0.71
CPSF3-201ENST00000238112 GNAZP19086 355 aa19.52■□□□□ 0.71
CPSF3-201ENST00000238112 GPD2P43304 727 aa19.52■□□□□ 0.71
CPSF3-201ENST00000238112 ZBTB16Q05516 673 aa19.52■□□□□ 0.71
CPSF3-201ENST00000238112 C1orf228Q6PIY5 440 aa19.52■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms