RNA–Protein interactions for RNA: ENST00000046640.7

CTNS-201, Transcript of cystinosin, lysosomal cystine transporter, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTNS, Length 2,866 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNS-201ENST00000046640 RPA3P35244 121 aaPredicted RBP13.74□□□□□ -0.21
CTNS-201ENST00000046640 BASP1P80723 227 aaKnown RBP13.74□□□□□ -0.21
CTNS-201ENST00000046640 HADHQ16836 314 aaKnown RBP13.74□□□□□ -0.21
CTNS-201ENST00000046640 C1orf228Q6PIY5 440 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 EXOC8Q8IYI6 725 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 GPRC5AQ8NFJ5 357 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 PEBP4Q96S96 227 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 MAF1Q9H063 256 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 ARHGEF3Q9NR81 526 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 GRID1Q9ULK0 1009 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 SNX9Q9Y5X1 595 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 FAM47DPA6NHR8 397 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 PDHXO00330 501 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 RNF8O76064 485 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 CA4P22748 312 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 GPD2P43304 727 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 GCLCP48506 637 aaPredicted RBP13.74□□□□□ -0.21
CTNS-201ENST00000046640 SLC26A2P50443 739 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 MTFR1Q15390 333 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 PRAMEF19Q5SWL8 479 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 FNBP1LQ5T0N5 605 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 LRRC38Q5VT99 294 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 TRNP1Q6NT89 227 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 DPP9Q86TI2 863 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 ACOT1Q86TX2 421 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 C7orf31Q8N865 590 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 CFAP57Q96MR6 1250 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 MIS12Q9H081 205 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.74□□□□□ -0.21
CTNS-201ENST00000046640 DDX56Q9NY93 547 aaKnown RBP13.74□□□□□ -0.21
CTNS-201ENST00000046640 PRKAG3Q9UGI9 489 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 TSPAN16Q9UKR8 245 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 USP18Q9UMW8 372 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 SIP14410 1827 aa13.74□□□□□ -0.21
CTNS-201ENST00000046640 PDGFRAP16234 1089 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 CDH6P55285 790 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 OVGP1Q12889 678 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 SNAPC2Q13487 334 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 RIPK1Q13546 671 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 LAMC2Q13753 1193 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 RNASEH2BQ5TBB1 312 aaKnown RBP13.73□□□□□ -0.21
CTNS-201ENST00000046640 PPP1R2P3Q6NXS1 205 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 MTHFD1LQ6UB35 978 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 MAMDC4Q6UXC1 1216 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 BZW1Q7L1Q6 419 aaKnown RBP13.73□□□□□ -0.21
CTNS-201ENST00000046640 SCUBE3Q8IX30 993 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 CXorf38Q8TB03 319 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 FBF1Q8TES7 1133 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 UTP4Q969X6 686 aaKnown RBP13.73□□□□□ -0.21
CTNS-201ENST00000046640 LENG1Q96BZ8 264 aaPredicted RBP13.73□□□□□ -0.21
CTNS-201ENST00000046640 ACAP3Q96P50 834 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 C16orf70Q9BSU1 422 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 B3GNT5Q9BYG0 378 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 TRABDQ9H4I3 376 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 CDHR5Q9HBB8 845 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.73□□□□□ -0.21
CTNS-201ENST00000046640 SNTG2Q9NY99 539 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 DCTN4Q9UJW0 460 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 ATP2A2P16615 1042 aaKnown RBP13.73□□□□□ -0.21
CTNS-201ENST00000046640 GCAP28676 217 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 RPL22P35268 128 aaKnown RBP13.73□□□□□ -0.21
CTNS-201ENST00000046640 SETDB1Q15047 1291 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 BBS9Q3SYG4 887 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 SESTD1Q86VW0 696 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 RXFP2Q8WXD0 754 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 C18orf25Q96B23 403 aaPredicted RBP13.73□□□□□ -0.21
CTNS-201ENST00000046640 SPDL1Q96EA4 605 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 FAXDC2Q96IV6 333 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 MAGEB5Q9BZ81 275 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 LHX5Q9H2C1 402 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 NGRNQ9NPE2 291 aaKnown RBP13.73□□□□□ -0.21
CTNS-201ENST00000046640 ZMYND8Q9ULU4 1186 aaPredicted RBP13.73□□□□□ -0.21
CTNS-201ENST00000046640 TSPAN1O60635 241 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 NPTXRO95502 500 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 KRT7P08729 469 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 CCND1P24385 295 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 SESN3P58005 492 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 EIF3EP60228 445 aaKnown RBP13.73□□□□□ -0.21
CTNS-201ENST00000046640 TAP1Q03518 808 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 SLC1A5Q15758 541 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 ZNF484Q5JVG2 852 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 FAM183BPQ6ZVS7 135 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 GBP7Q8N8V2 638 aaPredicted RBP13.73□□□□□ -0.21
CTNS-201ENST00000046640 SLC35B2Q8TB61 432 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 SPATA18Q8TC71 538 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 MRPL45Q9BRJ2 306 aaKnown RBP13.73□□□□□ -0.21
CTNS-201ENST00000046640 CHKBQ9Y259 395 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 HEY1Q9Y5J3 304 aa13.73□□□□□ -0.21
CTNS-201ENST00000046640 PDGFRBP09619 1106 aa13.72□□□□□ -0.21
CTNS-201ENST00000046640 RBP3P10745 1247 aa13.72□□□□□ -0.21
CTNS-201ENST00000046640 MCF2P10911 925 aa13.72□□□□□ -0.21
CTNS-201ENST00000046640 AKAP5P24588 427 aa13.72□□□□□ -0.21
CTNS-201ENST00000046640 ERFP50548 548 aa13.72□□□□□ -0.21
CTNS-201ENST00000046640 STAT4Q14765 748 aa13.72□□□□□ -0.21
CTNS-201ENST00000046640 CRYMQ14894 314 aa13.72□□□□□ -0.21
CTNS-201ENST00000046640 TAF11Q15544 211 aa13.72□□□□□ -0.21
CTNS-201ENST00000046640 GRIK4Q16099 956 aa13.72□□□□□ -0.21
CTNS-201ENST00000046640 HIF1AQ16665 826 aa13.72□□□□□ -0.21
CTNS-201ENST00000046640 ANKRD20A2Q5SQ80 823 aa13.72□□□□□ -0.21
CTNS-201ENST00000046640 PPP1R26Q5T8A7 1209 aaPredicted RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms