RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeastyeast

Gene CUP9, Length 921 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CUP9YPL177C ICS3P47034 131 aa0.85□□□□□ -2.27
CUP9YPL177C MIX14Q04341 121 aa0.85□□□□□ -2.27
CUP9YPL177C YMR321CQ04898 105 aa0.85□□□□□ -2.27
CUP9YPL177C SWC7Q06707 132 aa0.85□□□□□ -2.27
CUP9YPL177C YLR363W-AQ3E747 85 aa0.85□□□□□ -2.27
CUP9YPL177C RRT15Q3E811 62 aa0.85□□□□□ -2.27
CUP9YPL177C RSF2P46974 1380 aa0.84□□□□□ -2.27
CUP9YPL177C LTE1P07866 1435 aa0.84□□□□□ -2.27
CUP9YPL177C SNU13P39990 126 aaKnown RBP0.84□□□□□ -2.27
CUP9YPL177C YMR090WQ04304 227 aaKnown RBP0.84□□□□□ -2.27
CUP9YPL177C YGL041C-BQ3E750 60 aa0.84□□□□□ -2.27
CUP9YPL177C BPT1P14772 1559 aa0.83□□□□□ -2.28
CUP9YPL177C CAT8P39113 1433 aa0.83□□□□□ -2.28
CUP9YPL177C VPS55P47111 140 aa0.83□□□□□ -2.28
CUP9YPL177C YMR175W-AQ3E766 64 aa0.83□□□□□ -2.28
CUP9YPL177C YGR240C-AQ3E786 66 aa0.83□□□□□ -2.28
CUP9YPL177C DNA2P38859 1522 aa0.83□□□□□ -2.28
CUP9YPL177C SEC7P11075 2009 aaKnown RBP0.82□□□□□ -2.28
CUP9YPL177C YLR419WQ06698 1435 aaKnown RBP0.82□□□□□ -2.28
CUP9YPL177C ESC1Q03661 1658 aaKnown RBP0.82□□□□□ -2.28
CUP9YPL177C YPK9Q12697 1472 aa0.82□□□□□ -2.28
CUP9YPL177C YJR128WP47162 119 aa0.82□□□□□ -2.28
CUP9YPL177C LCL1Q02786 101 aa0.82□□□□□ -2.28
CUP9YPL177C YDR042CQ03205 200 aa0.82□□□□□ -2.28
CUP9YPL177C YOR034C-AQ3E735 80 aa0.82□□□□□ -2.28
CUP9YPL177C RPL43AP0CX25 92 aaKnown RBP0.81□□□□□ -2.28
CUP9YPL177C RPL43BP0CX26 92 aa0.81□□□□□ -2.28
CUP9YPL177C HMRA1P0CY11 126 aa0.81□□□□□ -2.28
CUP9YPL177C VMA21P41806 77 aa0.81□□□□□ -2.28
CUP9YPL177C TY1B-PR2P0C2J0 1756 aa0.8□□□□□ -2.28
CUP9YPL177C URB1P34241 1764 aaKnown RBP0.8□□□□□ -2.28
CUP9YPL177C PAU16P35994 123 aa0.8□□□□□ -2.28
CUP9YPL177C PAU15P40585 124 aa0.8□□□□□ -2.28
CUP9YPL177C MRPS12P53732 153 aa0.8□□□□□ -2.28
CUP9YPL177C RSM19P53733 91 aaPredicted RBP0.8□□□□□ -2.28
CUP9YPL177C YDR210WQ03482 75 aa0.8□□□□□ -2.28
CUP9YPL177C YDR029WQ12111 104 aa0.8□□□□□ -2.28
CUP9YPL177C YHL005CP38752 130 aa0.79□□□□□ -2.28
CUP9YPL177C LSM6Q06406 86 aaKnown RBP0.79□□□□□ -2.28
CUP9YPL177C YLR307C-AQ3E825 87 aa0.79□□□□□ -2.28
CUP9YPL177C ECM12O13529 151 aa0.78□□□□□ -2.28
CUP9YPL177C MRPL38P35996 138 aaPredicted RBP0.78□□□□□ -2.28
CUP9YPL177C EMC5P40540 141 aa0.78□□□□□ -2.28
CUP9YPL177C MSL1P40567 111 aaPredicted RBP0.78□□□□□ -2.28
CUP9YPL177C PAU5P43575 122 aa0.78□□□□□ -2.28
CUP9YPL177C POC4Q12245 148 aaPredicted RBP0.78□□□□□ -2.28
CUP9YPL177C RPA190P10964 1664 aaKnown RBP0.78□□□□□ -2.29
CUP9YPL177C SEC16P48415 2195 aaKnown RBP0.77□□□□□ -2.29
CUP9YPL177C CCW14O13547 238 aa0.77□□□□□ -2.29
CUP9YPL177C YLR157W-EP0CF00 54 aa0.77□□□□□ -2.29
CUP9YPL177C SRB6P32570 121 aa0.77□□□□□ -2.29
CUP9YPL177C ICY1Q04329 127 aa0.77□□□□□ -2.29
CUP9YPL177C YCL048W-AQ2V2Q2 79 aa0.77□□□□□ -2.29
CUP9YPL177C POL1P13382 1468 aa0.77□□□□□ -2.29
CUP9YPL177C GDB1Q06625 1536 aa0.77□□□□□ -2.29
CUP9YPL177C TY1B-BRQ12193 1756 aa0.77□□□□□ -2.29
CUP9YPL177C MYO1P08964 1928 aa0.76□□□□□ -2.29
CUP9YPL177C YRF1-2P40105 1681 aa0.76□□□□□ -2.29
CUP9YPL177C YLR255CO13574 117 aa0.76□□□□□ -2.29
CUP9YPL177C ROX3P25046 220 aa0.76□□□□□ -2.29
CUP9YPL177C YCR085WP25650 117 aa0.76□□□□□ -2.29
CUP9YPL177C YHR138CP38841 114 aaPredicted RBP0.76□□□□□ -2.29
CUP9YPL177C IMP2P46972 177 aa0.76□□□□□ -2.29
CUP9YPL177C YOL118CQ08259 102 aa0.76□□□□□ -2.29
CUP9YPL177C URA2P07259 2214 aaKnown RBP0.76□□□□□ -2.29
CUP9YPL177C BRR2P32639 2163 aaKnown RBP0.76□□□□□ -2.29
CUP9YPL177C TY4B-HP0C2J7 1802 aa0.75□□□□□ -2.29
CUP9YPL177C RPA12P32529 125 aaKnown RBP0.75□□□□□ -2.29
CUP9YPL177C RSM18P40033 138 aa0.75□□□□□ -2.29
CUP9YPL177C GCV3P39726 170 aaPredicted RBP0.74□□□□□ -2.29
CUP9YPL177C YDR119W-AQ2V2P9 66 aa0.74□□□□□ -2.29
CUP9YPL177C TY1B-NL2Q99337 1749 aaKnown RBP0.74□□□□□ -2.29
CUP9YPL177C ESP1Q03018 1630 aa0.74□□□□□ -2.29
CUP9YPL177C TY1B-DR1Q03855 1755 aa0.73□□□□□ -2.29
CUP9YPL177C TY1B-DR3Q99231 1755 aa0.73□□□□□ -2.29
CUP9YPL177C CWP2P43497 92 aa0.73□□□□□ -2.29
CUP9YPL177C YPL038W-AQ3E7B4 63 aa0.73□□□□□ -2.29
CUP9YPL177C POL2P21951 2222 aaKnown RBP0.73□□□□□ -2.29
CUP9YPL177C XRN1P22147 1528 aaKnown RBP0.73□□□□□ -2.29
CUP9YPL177C SWR1Q05471 1514 aa0.73□□□□□ -2.29
CUP9YPL177C YPR117WQ06116 2489 aa0.73□□□□□ -2.29
CUP9YPL177C AUA1P32450 94 aa0.72□□□□□ -2.29
CUP9YPL177C RPO31P04051 1460 aa0.72□□□□□ -2.29
CUP9YPL177C NUP159P40477 1460 aa0.72□□□□□ -2.29
CUP9YPL177C BPH1P25356 2167 aa0.72□□□□□ -2.29
CUP9YPL177C MRX7P53869 86 aa0.71□□□□□ -2.3
CUP9YPL177C YCR095W-AQ3E787 52 aa0.71□□□□□ -2.3
CUP9YPL177C SUS1Q6WNK7 96 aa0.71□□□□□ -2.3
CUP9YPL177C YHR213W-AQ8TGT4 77 aa0.71□□□□□ -2.3
CUP9YPL177C PAU6P0CE90 120 aa0.7□□□□□ -2.3
CUP9YPL177C PAU18P0CE91 120 aa0.7□□□□□ -2.3
CUP9YPL177C RPS11AP0CX47 156 aaKnown RBP0.7□□□□□ -2.3
CUP9YPL177C RPS11BP0CX48 156 aaKnown RBP0.7□□□□□ -2.3
CUP9YPL177C NHP2P32495 156 aaPredicted RBP0.7□□□□□ -2.3
CUP9YPL177C SHU1P38751 150 aa0.7□□□□□ -2.3
CUP9YPL177C YHR173CP38864 112 aa0.7□□□□□ -2.3
CUP9YPL177C YIL086CP40503 102 aa0.7□□□□□ -2.3
CUP9YPL177C SPC1P46965 94 aa0.7□□□□□ -2.3
CUP9YPL177C FAS2P19097 1887 aaKnown RBP0.69□□□□□ -2.3
CUP9YPL177C TOM6P33448 61 aa0.69□□□□□ -2.3
Retrieved 100 of 5,963 RNA–protein pairs in 143.4 ms