RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeastyeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP8YMR223W TY1B-MR1Q04214 1755 aa2.1□□□□□ -2.07
UBP8YMR223W TY1B-MR2Q04670 1755 aaKnown RBP2.1□□□□□ -2.07
UBP8YMR223W TY1B-LR1Q12088 1755 aaKnown RBP2.1□□□□□ -2.07
UBP8YMR223W TY1B-NL1Q12112 1755 aa2.1□□□□□ -2.07
UBP8YMR223W TY1B-GR1Q12141 1755 aa2.1□□□□□ -2.07
UBP8YMR223W TY1B-BLQ12490 1755 aa2.1□□□□□ -2.07
UBP8YMR223W YJL197C-AP0C5P0 93 aa2.09□□□□□ -2.07
UBP8YMR223W STF2P16965 84 aa2.09□□□□□ -2.07
UBP8YMR223W PAU16P35994 123 aa2.09□□□□□ -2.07
UBP8YMR223W YBR209WP38311 105 aa2.09□□□□□ -2.07
UBP8YMR223W PAU15P40585 124 aa2.09□□□□□ -2.07
UBP8YMR223W VMA21P41806 77 aa2.09□□□□□ -2.07
UBP8YMR223W DAD4P69851 72 aa2.09□□□□□ -2.07
UBP8YMR223W SML1Q04964 104 aa2.09□□□□□ -2.07
UBP8YMR223W YLR194CQ05777 254 aa2.09□□□□□ -2.07
UBP8YMR223W EMC6Q12431 108 aa2.09□□□□□ -2.07
UBP8YMR223W YOR093CQ12275 1648 aa2.09□□□□□ -2.08
UBP8YMR223W RPS25BP0C0T4 108 aaKnown RBP2.08□□□□□ -2.08
UBP8YMR223W COX23P38824 151 aa2.08□□□□□ -2.08
UBP8YMR223W POP3P53833 195 aaPredicted RBP2.08□□□□□ -2.08
UBP8YMR223W RGM1Q00453 211 aa2.08□□□□□ -2.08
UBP8YMR223W ICY1Q04329 127 aa2.08□□□□□ -2.08
UBP8YMR223W VPS68Q12016 184 aa2.08□□□□□ -2.08
UBP8YMR223W RPS25AQ3E792 108 aaPredicted RBP2.08□□□□□ -2.08
UBP8YMR223W PCC1Q3E833 88 aa2.08□□□□□ -2.08
UBP8YMR223W DOP1Q03921 1698 aa2.08□□□□□ -2.08
UBP8YMR223W RPL26AP05743 127 aaKnown RBP2.08□□□□□ -2.08
UBP8YMR223W RPA12P32529 125 aaKnown RBP2.08□□□□□ -2.08
UBP8YMR223W ATG8P38182 117 aaRIP-Chip data2.08□□□□□ -2.08not detected
UBP8YMR223W YEL014CP39999 101 aa2.08□□□□□ -2.08
UBP8YMR223W PAU5P43575 122 aa2.08□□□□□ -2.08
UBP8YMR223W SNN1P48232 102 aa2.08□□□□□ -2.08
UBP8YMR223W RPL26BP53221 127 aaKnown RBP2.08□□□□□ -2.08
UBP8YMR223W RDS3Q06835 107 aaPredicted RBP2.08□□□□□ -2.08
UBP8YMR223W YLR363W-AQ3E747 85 aa2.08□□□□□ -2.08
UBP8YMR223W SUS1Q6WNK7 96 aa2.08□□□□□ -2.08
UBP8YMR223W RPO21P04050 1733 aaKnown RBP2.07□□□□□ -2.08
UBP8YMR223W FAS2P19097 1887 aaKnown RBP2.07□□□□□ -2.08
UBP8YMR223W RPB7P34087 171 aa2.07□□□□□ -2.08
UBP8YMR223W GCV3P39726 170 aaPredicted RBP2.07□□□□□ -2.08
UBP8YMR223W GDB1Q06625 1536 aa2.06□□□□□ -2.08
UBP8YMR223W PAI3P01094 68 aa2.06□□□□□ -2.08
UBP8YMR223W QCR8P08525 94 aa2.06□□□□□ -2.08
UBP8YMR223W SRX1P36077 127 aa2.06□□□□□ -2.08
UBP8YMR223W YHL005CP38752 130 aa2.06□□□□□ -2.08
UBP8YMR223W YDR119W-AQ2V2P9 66 aa2.06□□□□□ -2.08
UBP8YMR223W ENV10Q99382 181 aa2.06□□□□□ -2.08
UBP8YMR223W VTH1P40438 1549 aa2.06□□□□□ -2.08
UBP8YMR223W VTH2P40890 1549 aa2.06□□□□□ -2.08
UBP8YMR223W SPO14P36126 1683 aa2.06□□□□□ -2.08
UBP8YMR223W RSM18P40033 138 aa2.05□□□□□ -2.08
UBP8YMR223W IMP2P46972 177 aa2.05□□□□□ -2.08
UBP8YMR223W MET31Q03081 177 aa2.05□□□□□ -2.08
UBP8YMR223W YMR030W-AQ3E760 96 aa2.05□□□□□ -2.08
UBP8YMR223W NUP170P38181 1502 aa2.04□□□□□ -2.08
UBP8YMR223W POL1P13382 1468 aa2.04□□□□□ -2.08
UBP8YMR223W YLR419WQ06698 1435 aaKnown RBP2.04□□□□□ -2.08
UBP8YMR223W RPL36BO14455 100 aaKnown RBP2.04□□□□□ -2.08
UBP8YMR223W RPL36AP05745 100 aaPredicted RBP2.04□□□□□ -2.08
UBP8YMR223W RPS22AP0C0W1 130 aaKnown RBP2.04□□□□□ -2.08
UBP8YMR223W YBR027CP38220 110 aa2.04□□□□□ -2.08
UBP8YMR223W ICS3P47034 131 aa2.04□□□□□ -2.08
UBP8YMR223W MLP1Q02455 1875 aaKnown RBP2.04□□□□□ -2.08
UBP8YMR223W CYT2Q00873 224 aa2.03□□□□□ -2.08
UBP8YMR223W SMC4Q12267 1418 aa2.03□□□□□ -2.09
UBP8YMR223W CDC39P25655 2108 aaKnown RBP2.02□□□□□ -2.09
UBP8YMR223W FLO9P39712 1322 aa2.02□□□□□ -2.09
UBP8YMR223W HMRA2P0CY13 119 aa2.02□□□□□ -2.09
UBP8YMR223W ROX3P25046 220 aa2.02□□□□□ -2.09
UBP8YMR223W TOM6P33448 61 aa2.02□□□□□ -2.09
UBP8YMR223W YHR022CP38763 256 aa2.02□□□□□ -2.09
UBP8YMR223W YPR145C-AQ2V2P0 78 aa2.02□□□□□ -2.09
UBP8YMR223W ULS1Q08562 1619 aa2.02□□□□□ -2.09
UBP8YMR223W SNQ2P32568 1501 aaKnown RBP2.02□□□□□ -2.09
UBP8YMR223W STU1P38198 1513 aa2.02□□□□□ -2.09
UBP8YMR223W ARO1P08566 1588 aaKnown RBP2.01□□□□□ -2.09
UBP8YMR223W SSS1P35179 80 aa2.01□□□□□ -2.09
UBP8YMR223W LST8P41318 303 aa2.01□□□□□ -2.09
UBP8YMR223W CYR1P08678 2026 aaKnown RBP2.01□□□□□ -2.09
UBP8YMR223W PDR15Q04182 1529 aaKnown RBP2□□□□□ -2.09
UBP8YMR223W NHP2P32495 156 aaPredicted RBP2□□□□□ -2.09
UBP8YMR223W AIM4P38305 123 aaPredicted RBP2□□□□□ -2.09
UBP8YMR223W POR2P40478 281 aa2□□□□□ -2.09
UBP8YMR223W HPA2Q06592 156 aa2□□□□□ -2.09
UBP8YMR223W YOL131WQ08270 108 aa2□□□□□ -2.09
UBP8YMR223W RPS22BQ3E7Y3 130 aaKnown RBP2□□□□□ -2.09
UBP8YMR223W DNF3Q12674 1656 aa2□□□□□ -2.09
UBP8YMR223W HAP1P0CE41 1502 aa2□□□□□ -2.09
UBP8YMR223W PDR12Q02785 1511 aa2□□□□□ -2.09
UBP8YMR223W ECM29P38737 1868 aa2□□□□□ -2.09
UBP8YMR223W MYO4P32492 1471 aa2□□□□□ -2.09
UBP8YMR223W MIX17Q03667 156 aa2□□□□□ -2.09
UBP8YMR223W YLR285C-AQ3E771 56 aa2□□□□□ -2.09
UBP8YMR223W RPL22AP05749 121 aaKnown RBP1.99□□□□□ -2.09
UBP8YMR223W MRPL38P35996 138 aaPredicted RBP1.99□□□□□ -2.09
UBP8YMR223W SWM2P40342 146 aa1.99□□□□□ -2.09
UBP8YMR223W MIC27P50945 234 aa1.99□□□□□ -2.09
UBP8YMR223W YOL118CQ08259 102 aa1.99□□□□□ -2.09
UBP8YMR223W YDR381C-AQ3E6R5 114 aa1.99□□□□□ -2.09
UBP8YMR223W TAR1Q8TGM6 124 aa1.99□□□□□ -2.09
Retrieved 100 of 5,963 RNA–protein pairs in 12.5 ms