RNA–Protein interactions for RNA: YHR120W

MSH1, Transcript of DNA-binding protein of the mitochondria, yeastyeast

Gene MSH1, Length 2,880 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
MSH1YHR120W CYC7P00045 113 aa3.81□□□□□ -1.8
MSH1YHR120W AGA1P32323 725 aa3.81□□□□□ -1.8
MSH1YHR120W KTI12P34253 313 aaKnown RBP3.81□□□□□ -1.8
MSH1YHR120W YPL257WQ08974 193 aa3.81□□□□□ -1.8
MSH1YHR120W AUA1P32450 94 aa3.81□□□□□ -1.8
MSH1YHR120W SLO1Q3E784 85 aa3.81□□□□□ -1.8
MSH1YHR120W VAR1P02381 398 aa3.81□□□□□ -1.8
MSH1YHR120W HMRA2P0CY13 119 aa3.81□□□□□ -1.8
MSH1YHR120W YER181CP40097 107 aa3.81□□□□□ -1.8
MSH1YHR120W YNL217WP40152 326 aa3.81□□□□□ -1.8
MSH1YHR120W ATP23P53722 227 aa3.81□□□□□ -1.8
MSH1YHR120W YNR077CP53758 84 aa3.81□□□□□ -1.8
MSH1YHR120W RRG8Q06109 277 aa3.81□□□□□ -1.8
MSH1YHR120W ADH1P00330 348 aaKnown RBP3.8□□□□□ -1.8
MSH1YHR120W RPS8AP0CX39 200 aaKnown RBP3.8□□□□□ -1.8
MSH1YHR120W RPS8BP0CX40 200 aaKnown RBP3.8□□□□□ -1.8
MSH1YHR120W RPL32P38061 130 aaKnown RBP3.8□□□□□ -1.8
MSH1YHR120W YHR022CP38763 256 aa3.8□□□□□ -1.8
MSH1YHR120W YEL067CP39978 195 aa3.8□□□□□ -1.8
MSH1YHR120W SIM1P40472 476 aa3.8□□□□□ -1.8
MSH1YHR120W YPL261CQ08976 102 aa3.8□□□□□ -1.8
MSH1YHR120W IGO2Q9P305 131 aa3.8□□□□□ -1.8
MSH1YHR120W URM1P40554 99 aaPredicted RBP3.8□□□□□ -1.8
MSH1YHR120W DUO1P53168 247 aaKnown RBP3.8□□□□□ -1.8
MSH1YHR120W YNL146C-AQ3E7Z1 64 aa3.8□□□□□ -1.8
MSH1YHR120W YRA2P36036 203 aaKnown RBP RIP-Chip data3.79□□□□□ -1.8not detected
MSH1YHR120W YBR200W-AQ3E755 54 aa3.79□□□□□ -1.8
MSH1YHR120W YOR008C-AQ3E7B9 74 aa3.79□□□□□ -1.8
MSH1YHR120W GLO1P50107 326 aa3.79□□□□□ -1.8
MSH1YHR120W ALG13P53178 202 aa3.79□□□□□ -1.8
MSH1YHR120W YDL022C-AP0C5L6 82 aa3.78□□□□□ -1.8
MSH1YHR120W YPT53P36019 220 aa3.78□□□□□ -1.8
MSH1YHR120W YGR025WP53216 100 aa3.78□□□□□ -1.8
MSH1YHR120W OXA1P39952 402 aa3.77□□□□□ -1.81
MSH1YHR120W AIM11P87275 137 aa3.77□□□□□ -1.81
MSH1YHR120W YJR146WP47174 117 aa3.77□□□□□ -1.81
MSH1YHR120W YIP3P53633 176 aa3.77□□□□□ -1.81
MSH1YHR120W LSM6Q06406 86 aaKnown RBP3.77□□□□□ -1.81
MSH1YHR120W VTS1Q08831 523 aaKnown RBP RIP-Chip data3.77□□□□□ -1.81not detected
MSH1YHR120W YOR011W-AQ3E807 68 aa3.77□□□□□ -1.81
MSH1YHR120W NRG2P38082 220 aa3.77□□□□□ -1.81
MSH1YHR120W DCV1P43595 202 aa3.77□□□□□ -1.81
MSH1YHR120W AIM34Q03673 198 aa3.76□□□□□ -1.81
MSH1YHR120W YLR194CQ05777 254 aa3.76□□□□□ -1.81
MSH1YHR120W PRM7Q12459 698 aa3.76□□□□□ -1.81
MSH1YHR120W KEG1P43614 200 aa3.76□□□□□ -1.81
MSH1YHR120W TRP1P00912 224 aa3.75□□□□□ -1.81
MSH1YHR120W CDC43P18898 376 aa3.75□□□□□ -1.81
MSH1YHR120W MLF3P32047 452 aa3.75□□□□□ -1.81
MSH1YHR120W NHP2P32495 156 aaPredicted RBP3.75□□□□□ -1.81
MSH1YHR120W PEX17P40155 199 aa3.75□□□□□ -1.81
MSH1YHR120W MRPS12P53732 153 aa3.75□□□□□ -1.81
MSH1YHR120W YMR244WQ04018 355 aa3.75□□□□□ -1.81
MSH1YHR120W YPR053CQ6Q5F3 151 aa3.75□□□□□ -1.81
MSH1YHR120W VTC1P40046 129 aaRIP-Chip data3.74□□□□□ -1.81not detected
MSH1YHR120W COX12Q01519 83 aa3.74□□□□□ -1.81
MSH1YHR120W YFR057WP43625 151 aa3.74□□□□□ -1.81
MSH1YHR120W YOL085CQ99345 113 aa3.73□□□□□ -1.81
MSH1YHR120W Q0255P03881 472 aa3.73□□□□□ -1.81
MSH1YHR120W ATX1P38636 73 aa3.73□□□□□ -1.81
MSH1YHR120W YCH1P42937 148 aa3.73□□□□□ -1.81
MSH1YHR120W OST2P46964 130 aa3.73□□□□□ -1.81
MSH1YHR120W MRPS8Q03799 155 aa3.73□□□□□ -1.81
MSH1YHR120W RPL16AP26784 199 aaKnown RBP3.73□□□□□ -1.81
MSH1YHR120W RPL16BP26785 198 aaKnown RBP3.73□□□□□ -1.81
MSH1YHR120W YER135CP40082 130 aa3.73□□□□□ -1.81
MSH1YHR120W HPA2Q06592 156 aa3.73□□□□□ -1.81
MSH1YHR120W RDS3Q06835 107 aaPredicted RBP3.73□□□□□ -1.81
MSH1YHR120W COX10P21592 462 aa3.72□□□□□ -1.81
MSH1YHR120W MIG3P39943 394 aa3.72□□□□□ -1.81
MSH1YHR120W ATP15P21306 62 aa3.72□□□□□ -1.81
MSH1YHR120W YER085CP40058 173 aa3.72□□□□□ -1.81
MSH1YHR120W UGX2P32772 223 aa3.71□□□□□ -1.82
MSH1YHR120W RPP2AP05319 106 aaKnown RBP3.71□□□□□ -1.82
MSH1YHR120W YLR042CQ07990 161 aa3.71□□□□□ -1.82
MSH1YHR120W QCR8P08525 94 aa3.7□□□□□ -1.82
MSH1YHR120W YKL069WP36088 180 aa3.7□□□□□ -1.82
MSH1YHR120W SHU1P38751 150 aa3.7□□□□□ -1.82
MSH1YHR120W KRE1P17260 313 aa3.69□□□□□ -1.82
MSH1YHR120W RRT13P40042 185 aa3.69□□□□□ -1.82
MSH1YHR120W YFR035CP43608 114 aa3.69□□□□□ -1.82
MSH1YHR120W RPS11AP0CX47 156 aaKnown RBP3.69□□□□□ -1.82
MSH1YHR120W RPS11BP0CX48 156 aaKnown RBP3.69□□□□□ -1.82
MSH1YHR120W RPA12P32529 125 aaKnown RBP3.69□□□□□ -1.82
MSH1YHR120W EOS1P53938 366 aa3.69□□□□□ -1.82
MSH1YHR120W RPL28P02406 149 aaKnown RBP3.68□□□□□ -1.82
MSH1YHR120W RPL2AP0CX45 254 aaKnown RBP3.68□□□□□ -1.82
MSH1YHR120W RPL2BP0CX46 254 aaKnown RBP3.68□□□□□ -1.82
MSH1YHR120W YCR085WP25650 117 aa3.68□□□□□ -1.82
MSH1YHR120W YAR029WP39549 74 aa3.68□□□□□ -1.82
MSH1YHR120W UBC5P15732 148 aa3.68□□□□□ -1.82
MSH1YHR120W RPL18AP0CX49 186 aaKnown RBP3.67□□□□□ -1.82
MSH1YHR120W RPL18BP0CX50 186 aaKnown RBP3.67□□□□□ -1.82
MSH1YHR120W YHR130CP38834 111 aa3.67□□□□□ -1.82
MSH1YHR120W YEL008WP40001 126 aa3.67□□□□□ -1.82
MSH1YHR120W INO4P13902 151 aa3.67□□□□□ -1.82
MSH1YHR120W YFL065CP43539 102 aa3.66□□□□□ -1.82
MSH1YHR120W YPR203WQ08994 102 aa3.66□□□□□ -1.82
MSH1YHR120W ISD11Q6Q560 94 aa3.66□□□□□ -1.82
MSH1YHR120W YCR001WP25347 104 aa3.66□□□□□ -1.82
Retrieved 100 of 5,963 RNA–protein pairs in 14.1 ms