RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	GPI19	Q04082	140 aa		2.8	□□□□□ -1.96
UBX5	YDR330W	YPL162C	Q12042	273 aa		2.8	□□□□□ -1.96
UBX5	YDR330W	YPR013C	Q12145	317 aa		2.8	□□□□□ -1.96
UBX5	YDR330W	ISD11	Q6Q560	94 aa		2.8	□□□□□ -1.96
UBX5	YDR330W	YGL230C	P53074	147 aa		2.79	□□□□□ -1.96
UBX5	YDR330W	TOS8	P53147	276 aa		2.79	□□□□□ -1.96
UBX5	YDR330W	YGR017W	P53210	297 aa		2.79	□□□□□ -1.96
UBX5	YDR330W	DIA1	P54005	336 aa		2.79	□□□□□ -1.96
UBX5	YDR330W	YIL014C-A	Q02598	104 aa		2.79	□□□□□ -1.96
UBX5	YDR330W	HOR7	Q05827	59 aa		2.79	□□□□□ -1.96
UBX5	YDR330W	PAU23	Q07987	124 aa		2.79	□□□□□ -1.96
UBX5	YDR330W	YLR050C	Q12155	161 aa	Known RBP	2.79	□□□□□ -1.96
UBX5	YDR330W	PAU17	Q12370	124 aa		2.79	□□□□□ -1.96
UBX5	YDR330W	YPR014C	Q6B0W2	109 aa		2.79	□□□□□ -1.96
UBX5	YDR330W	HTL1	Q9URQ5	78 aa		2.79	□□□□□ -1.96
UBX5	YDR330W	FYV4	P38783	130 aa	Predicted RBP	2.78	□□□□□ -1.96
UBX5	YDR330W	YER188W	P40103	239 aa		2.78	□□□□□ -1.96
UBX5	YDR330W	MRPL49	P40858	161 aa	Predicted RBP	2.78	□□□□□ -1.96
UBX5	YDR330W	GLC8	P41818	229 aa		2.78	□□□□□ -1.96
UBX5	YDR330W	ATG39	Q06159	398 aa		2.78	□□□□□ -1.96
UBX5	YDR330W	SCS22	Q6Q595	175 aa		2.78	□□□□□ -1.96
UBX5	YDR330W	RPL27B	P0C2H7	136 aa	Known RBP	2.78	□□□□□ -1.97
UBX5	YDR330W	HAP3	P13434	144 aa		2.78	□□□□□ -1.97
UBX5	YDR330W	YCR023C	P25351	611 aa		2.78	□□□□□ -1.97
UBX5	YDR330W	UTR5	P32630	166 aa		2.78	□□□□□ -1.97
UBX5	YDR330W	YHR022C	P38763	256 aa		2.78	□□□□□ -1.97
UBX5	YDR330W	MSL1	P40567	111 aa	Predicted RBP	2.78	□□□□□ -1.97
UBX5	YDR330W	ALG13	P53178	202 aa		2.78	□□□□□ -1.97
UBX5	YDR330W	YIP3	P53633	176 aa		2.78	□□□□□ -1.97
UBX5	YDR330W	GIS2	P53849	153 aa	Known RBP RIP-Chip data	2.78	□□□□□ -1.97	not detected
UBX5	YDR330W	MGR2	Q02889	113 aa		2.78	□□□□□ -1.97
UBX5	YDR330W	YDR042C	Q03205	200 aa		2.78	□□□□□ -1.97
UBX5	YDR330W	VPS71	Q03433	280 aa		2.78	□□□□□ -1.97
UBX5	YDR330W	GRH1	Q04410	372 aa	Known RBP	2.78	□□□□□ -1.97
UBX5	YDR330W	CCW12	Q12127	133 aa		2.78	□□□□□ -1.97
UBX5	YDR330W	PRM7	Q12459	698 aa		2.78	□□□□□ -1.97
UBX5	YDR330W	YBL112C	Q3E7Y4	105 aa		2.78	□□□□□ -1.97
UBX5	YDR330W	PFY1	P07274	126 aa		2.77	□□□□□ -1.97
UBX5	YDR330W	PRE1	P22141	198 aa	Known RBP	2.77	□□□□□ -1.97
UBX5	YDR330W	YNL146C-A	Q3E7Z1	64 aa		2.77	□□□□□ -1.97
UBX5	YDR330W	YOR011W-A	Q3E807	68 aa		2.77	□□□□□ -1.97
UBX5	YDR330W	VAR1	P02381	398 aa		2.76	□□□□□ -1.97
UBX5	YDR330W	CUP1-1	P0CX80	61 aa		2.76	□□□□□ -1.97
UBX5	YDR330W	CUP1-2	P0CX81	61 aa		2.76	□□□□□ -1.97
UBX5	YDR330W	APS1	P35181	156 aa		2.76	□□□□□ -1.97
UBX5	YDR330W	YER076C	P40049	302 aa		2.76	□□□□□ -1.97
UBX5	YDR330W	YGL034C	P53186	121 aa		2.76	□□□□□ -1.97
UBX5	YDR330W	TVP18	Q04767	167 aa		2.76	□□□□□ -1.97
UBX5	YDR330W	FCF1	Q05498	189 aa	Predicted RBP	2.76	□□□□□ -1.97
UBX5	YDR330W	PRM3	Q08931	133 aa		2.76	□□□□□ -1.97
UBX5	YDR330W	YKR070W	P36151	352 aa	Known RBP	2.75	□□□□□ -1.97
UBX5	YDR330W	YER135C	P40082	130 aa		2.75	□□□□□ -1.97
UBX5	YDR330W	FIP1	P45976	327 aa		2.75	□□□□□ -1.97
UBX5	YDR330W	TOS6	P48560	102 aa		2.75	□□□□□ -1.97
UBX5	YDR330W	YMR103C	Q04436	120 aa		2.75	□□□□□ -1.97
UBX5	YDR330W	DGA1	Q08650	418 aa		2.75	□□□□□ -1.97
UBX5	YDR330W	YBR200W-A	Q3E755	54 aa		2.75	□□□□□ -1.97
UBX5	YDR330W	YKL044W	P36092	106 aa		2.74	□□□□□ -1.97
UBX5	YDR330W	CWC27	Q02770	301 aa		2.74	□□□□□ -1.97
UBX5	YDR330W	URA2	P07259	2214 aa	Known RBP	2.74	□□□□□ -1.97
UBX5	YDR330W	PRP8	P33334	2413 aa	Known RBP	2.74	□□□□□ -1.97
UBX5	YDR330W	PRY2	P36110	329 aa		2.73	□□□□□ -1.97
UBX5	YDR330W	YIL059C	P40520	121 aa		2.73	□□□□□ -1.97
UBX5	YDR330W	YDR366C	P87287	132 aa		2.73	□□□□□ -1.97
UBX5	YDR330W	MRPS8	Q03799	155 aa		2.73	□□□□□ -1.97
UBX5	YDR330W	TAR1	Q8TGM6	124 aa		2.73	□□□□□ -1.97
UBX5	YDR330W	CCW14	O13547	238 aa		2.73	□□□□□ -1.97
UBX5	YDR330W	Q0255	P03881	472 aa		2.73	□□□□□ -1.97
UBX5	YDR330W	YPR170W-B	P0C5R9	85 aa		2.73	□□□□□ -1.97
UBX5	YDR330W	HMRA2	P0CY13	119 aa		2.73	□□□□□ -1.97
UBX5	YDR330W	PEX17	P40155	199 aa		2.73	□□□□□ -1.97
UBX5	YDR330W	MSA1	Q08471	629 aa		2.73	□□□□□ -1.97
UBX5	YDR330W	YLR363W-A	Q3E747	85 aa		2.73	□□□□□ -1.97
UBX5	YDR330W	COA3	Q3E7B2	85 aa		2.73	□□□□□ -1.97
UBX5	YDR330W	MRP49	P32388	137 aa		2.72	□□□□□ -1.97
UBX5	YDR330W	YPL073C	P40323	161 aa		2.72	□□□□□ -1.97
UBX5	YDR330W	DCV1	P43595	202 aa		2.72	□□□□□ -1.97
UBX5	YDR330W	YFR035C	P43608	114 aa		2.72	□□□□□ -1.97
UBX5	YDR330W	AIM34	Q03673	198 aa		2.72	□□□□□ -1.97
UBX5	YDR330W	YOR008C-A	Q3E7B9	74 aa		2.72	□□□□□ -1.97
UBX5	YDR330W	MEC1	P38111	2368 aa		2.72	□□□□□ -1.97
UBX5	YDR330W	MBF1	O14467	151 aa	Known RBP	2.71	□□□□□ -1.98
UBX5	YDR330W	YHR212W-A	P0CX91	67 aa		2.71	□□□□□ -1.98
UBX5	YDR330W	ECM33	P38248	429 aa	Known RBP	2.71	□□□□□ -1.98
UBX5	YDR330W	YML079W	Q03629	201 aa		2.71	□□□□□ -1.98
UBX5	YDR330W	YLR042C	Q07990	161 aa		2.71	□□□□□ -1.98
UBX5	YDR330W	YPL257W	Q08974	193 aa		2.71	□□□□□ -1.98
UBX5	YDR330W	YPL261C	Q08976	102 aa		2.71	□□□□□ -1.98
UBX5	YDR330W	YPL229W	Q99395	206 aa		2.71	□□□□□ -1.98
UBX5	YDR330W	YDL022C-A	P0C5L6	82 aa		2.7	□□□□□ -1.98
UBX5	YDR330W	YCL042W	P25572	119 aa		2.7	□□□□□ -1.98
UBX5	YDR330W	RPF1	P38805	295 aa	Known RBP	2.7	□□□□□ -1.98
UBX5	YDR330W	MPC2	P38857	129 aa		2.7	□□□□□ -1.98
UBX5	YDR330W	ABF2	Q02486	183 aa		2.7	□□□□□ -1.98
UBX5	YDR330W	YOR020W-A	Q3E824	90 aa		2.7	□□□□□ -1.98
UBX5	YDR330W	TOR1	P35169	2470 aa		2.7	□□□□□ -1.98
UBX5	YDR330W	RPL2A	P0CX45	254 aa	Known RBP	2.69	□□□□□ -1.98
UBX5	YDR330W	RPL2B	P0CX46	254 aa	Known RBP	2.69	□□□□□ -1.98
UBX5	YDR330W	RPS11A	P0CX47	156 aa	Known RBP	2.69	□□□□□ -1.98
UBX5	YDR330W	RPS11B	P0CX48	156 aa	Known RBP	2.69	□□□□□ -1.98

Retrieved 100 of 5,963 RNA–protein pairs in 10.4 ms