RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 FILIP1Q7Z7B0 1213 aa16.06■□□□□ 0.16
SYNE2-228ENST00000639659 SFTPA1Q8IWL2 248 aa16.06■□□□□ 0.16
SYNE2-228ENST00000639659 TMEFF1Q8IYR6 380 aa16.06■□□□□ 0.16
SYNE2-228ENST00000639659 ALLCQ8N6M5 410 aa16.06■□□□□ 0.16
SYNE2-228ENST00000639659 TOP6BLQ8N6T0 577 aa16.06■□□□□ 0.16
SYNE2-228ENST00000639659 TXNDC5Q8NBS9 432 aaKnown RBP16.06■□□□□ 0.16
SYNE2-228ENST00000639659 SPACA7Q96KW9 195 aa16.06■□□□□ 0.16
SYNE2-228ENST00000639659 CNOT6LQ96LI5 555 aaKnown RBP16.06■□□□□ 0.16
SYNE2-228ENST00000639659 CBWD1Q9BRT8 395 aa16.06■□□□□ 0.16
SYNE2-228ENST00000639659 SCNM1Q9BWG6 230 aa16.06■□□□□ 0.16
SYNE2-228ENST00000639659 CCDC39Q9UFE4 941 aa16.06■□□□□ 0.16
SYNE2-228ENST00000639659 MMP17Q9ULZ9 603 aa16.06■□□□□ 0.16
SYNE2-228ENST00000639659 ARHGAP26Q9UNA1 814 aa16.06■□□□□ 0.16
SYNE2-228ENST00000639659 MYMKA6NI61 221 aa16.05■□□□□ 0.16
SYNE2-228ENST00000639659 PPP1R37O75864 691 aa16.05■□□□□ 0.16
SYNE2-228ENST00000639659 LDHAP00338 332 aaKnown RBP16.05■□□□□ 0.16
SYNE2-228ENST00000639659 CYP17A1P05093 508 aa16.05■□□□□ 0.16
SYNE2-228ENST00000639659 SLC6A11P48066 632 aa16.05■□□□□ 0.16
SYNE2-228ENST00000639659 PDE6CP51160 858 aa16.05■□□□□ 0.16
SYNE2-228ENST00000639659 CASP5P51878 434 aa16.05■□□□□ 0.16
SYNE2-228ENST00000639659 USP46P62068 366 aa16.05■□□□□ 0.16
SYNE2-228ENST00000639659 POU5F1Q01860 360 aaKnown RBP16.05■□□□□ 0.16
SYNE2-228ENST00000639659 MYO1EQ12965 1108 aa16.05■□□□□ 0.16
SYNE2-228ENST00000639659 RESTQ13127 1097 aa16.05■□□□□ 0.16
SYNE2-228ENST00000639659 RABEP1Q15276 862 aa16.05■□□□□ 0.16
SYNE2-228ENST00000639659 CRY1Q16526 586 aa16.05■□□□□ 0.16
SYNE2-228ENST00000639659 SOWAHAQ2M3V2 549 aa16.05■□□□□ 0.16
SYNE2-228ENST00000639659 LARP1BQ659C4 914 aaKnown RBP16.05■□□□□ 0.16
SYNE2-228ENST00000639659 TMEM92Q6UXU6 159 aa16.05■□□□□ 0.16
SYNE2-228ENST00000639659 LPCAT2Q7L5N7 544 aa16.05■□□□□ 0.16
SYNE2-228ENST00000639659 SPATA18Q8TC71 538 aa16.05■□□□□ 0.16
SYNE2-228ENST00000639659 HMGB4Q8WW32 186 aa16.05■□□□□ 0.16
SYNE2-228ENST00000639659 FUBP3Q96I24 572 aaKnown RBP eCLIP16.05■□□□□ 0.16
SYNE2-228ENST00000639659 ANKRD36BP1Q96IX9 119 aa16.05■□□□□ 0.16
SYNE2-228ENST00000639659 MMS19Q96T76 1030 aa16.05■□□□□ 0.16
SYNE2-228ENST00000639659 NUSAP1Q9BXS6 441 aaKnown RBP16.05■□□□□ 0.16
SYNE2-228ENST00000639659 GDAP2Q9NXN4 497 aa16.05■□□□□ 0.16
SYNE2-228ENST00000639659 SIX4Q9UIU6 781 aa16.05■□□□□ 0.16
SYNE2-228ENST00000639659 CPQQ9Y646 472 aa16.05■□□□□ 0.16
SYNE2-228ENST00000639659 VPS37CA5D8V6 355 aaPredicted RBP16.04■□□□□ 0.16
SYNE2-228ENST00000639659 CDX4O14627 284 aaPredicted RBP16.04■□□□□ 0.16
SYNE2-228ENST00000639659 CLSTN1O94985 981 aa16.04■□□□□ 0.16
SYNE2-228ENST00000639659 APODP05090 189 aa16.04■□□□□ 0.16
SYNE2-228ENST00000639659 CFIP05156 583 aa16.04■□□□□ 0.16
SYNE2-228ENST00000639659 CEACAM1P13688 526 aa16.04■□□□□ 0.16
SYNE2-228ENST00000639659 HNRNPLP14866 589 aaKnown RBP eCLIP16.04■□□□□ 0.16
SYNE2-228ENST00000639659 GAP43P17677 238 aa16.04■□□□□ 0.16
SYNE2-228ENST00000639659 LMO2P25791 158 aa16.04■□□□□ 0.16
SYNE2-228ENST00000639659 MAGEA11P43364 429 aa16.04■□□□□ 0.16
SYNE2-228ENST00000639659 ZXDBP98169 803 aa16.04■□□□□ 0.16
SYNE2-228ENST00000639659 COL9A2Q14055 689 aaPredicted RBP16.04■□□□□ 0.16
SYNE2-228ENST00000639659 RRAGBQ5VZM2 374 aa16.04■□□□□ 0.16
SYNE2-228ENST00000639659 DENND5BQ6ZUT9 1274 aa16.04■□□□□ 0.16
SYNE2-228ENST00000639659 SV2BQ7L1I2 683 aa16.04■□□□□ 0.16
SYNE2-228ENST00000639659 HS2ST1Q7LGA3 356 aa16.04■□□□□ 0.16
SYNE2-228ENST00000639659 RASSF3Q86WH2 238 aa16.04■□□□□ 0.16
SYNE2-228ENST00000639659 FRMD1Q8N878 549 aa16.04■□□□□ 0.16
SYNE2-228ENST00000639659 WHAMMQ8TF30 809 aa16.04■□□□□ 0.16
SYNE2-228ENST00000639659 ZCCHC14Q8WYQ9 949 aaKnown RBP16.04■□□□□ 0.16
SYNE2-228ENST00000639659 HPDLQ96IR7 371 aa16.04■□□□□ 0.16
SYNE2-228ENST00000639659 POLMQ9NP87 494 aaPredicted RBP16.04■□□□□ 0.16
SYNE2-228ENST00000639659 FSCN3Q9NQT6 498 aa16.04■□□□□ 0.16
SYNE2-228ENST00000639659 CFAP97Q9P2B7 532 aa16.04■□□□□ 0.16
SYNE2-228ENST00000639659 SEL1LQ9UBV2 794 aa16.04■□□□□ 0.16
SYNE2-228ENST00000639659 STK17AQ9UEE5 414 aa16.04■□□□□ 0.16
SYNE2-228ENST00000639659 FAM208BQ5VWN6 2430 aa16.04■□□□□ 0.16
SYNE2-228ENST00000639659 IGF2RP11717 2491 aa16.03■□□□□ 0.16
SYNE2-228ENST00000639659 TCRBV21S2A2A0A5A6 115 aa16.03■□□□□ 0.16
SYNE2-228ENST00000639659 SGK1O00141 431 aa16.03■□□□□ 0.16
SYNE2-228ENST00000639659 HYAL3O43820 417 aaPredicted RBP16.03■□□□□ 0.16
SYNE2-228ENST00000639659 PRPF6O94906 941 aaKnown RBP16.03■□□□□ 0.16
SYNE2-228ENST00000639659 CD2BP2O95400 341 aaKnown RBP16.03■□□□□ 0.16
SYNE2-228ENST00000639659 TNNC2P02585 160 aa16.03■□□□□ 0.16
SYNE2-228ENST00000639659 MBL2P11226 248 aaPredicted RBP16.03■□□□□ 0.16
SYNE2-228ENST00000639659 CSRP1P21291 193 aaKnown RBP16.03■□□□□ 0.16
SYNE2-228ENST00000639659 GARTP22102 1010 aa16.03■□□□□ 0.16
SYNE2-228ENST00000639659 TXLNAP40222 546 aa16.03■□□□□ 0.16
SYNE2-228ENST00000639659 PTGER3P43115 390 aa16.03■□□□□ 0.16
SYNE2-228ENST00000639659 ATXN3P54252 364 aaPredicted RBP16.03■□□□□ 0.16
SYNE2-228ENST00000639659 DHCR24Q15392 516 aa16.03■□□□□ 0.16
SYNE2-228ENST00000639659 MDH1BQ5I0G3 518 aa16.03■□□□□ 0.16
SYNE2-228ENST00000639659 EMC10Q5UCC4 262 aa16.03■□□□□ 0.16
SYNE2-228ENST00000639659 C12orf40Q86WS4 652 aa16.03■□□□□ 0.16
SYNE2-228ENST00000639659 DEFB119Q8N690 84 aa16.03■□□□□ 0.16
SYNE2-228ENST00000639659 OR5B17Q8NGF7 314 aa16.03■□□□□ 0.16
SYNE2-228ENST00000639659 ERLEC1Q96DZ1 483 aa16.03■□□□□ 0.16
SYNE2-228ENST00000639659 PNKPQ96T60 521 aa16.03■□□□□ 0.16
SYNE2-228ENST00000639659 GTPBP2Q9BX10 602 aaKnown RBP16.03■□□□□ 0.16
SYNE2-228ENST00000639659 FGFBP2Q9BYJ0 223 aa16.03■□□□□ 0.16
SYNE2-228ENST00000639659 SLC32A1Q9H598 525 aa16.03■□□□□ 0.16
SYNE2-228ENST00000639659 CRTAC1Q9NQ79 661 aa16.03■□□□□ 0.16
SYNE2-228ENST00000639659 ARHGEF4Q9NR80 690 aa16.03■□□□□ 0.16
SYNE2-228ENST00000639659 CDH9Q9ULB4 789 aa16.03■□□□□ 0.16
SYNE2-228ENST00000639659 PCDHB13Q9Y5F0 798 aa16.03■□□□□ 0.16
SYNE2-228ENST00000639659 PTPRJQ12913 1337 aa16.02■□□□□ 0.16
SYNE2-228ENST00000639659 SPAARA0A1B0GVQ0 90 aa16.02■□□□□ 0.16
SYNE2-228ENST00000639659 F8VP50 259 aa16.02■□□□□ 0.16
SYNE2-228ENST00000639659 GABRDO14764 452 aa16.02■□□□□ 0.16
SYNE2-228ENST00000639659 TRIM66O15016 1216 aa16.02■□□□□ 0.16
SYNE2-228ENST00000639659 KAT7O95251 611 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms