RNA–Protein interactions for RNA: ENST00000637494.1

CLN6-221, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5 BASIC

Gene CLN6, Length 765 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-221ENST00000637494 SLITRK1Q96PX8 696 aa20.18■□□□□ 0.82
CLN6-221ENST00000637494 FAM83CQ9BQN1 747 aa20.18■□□□□ 0.82
CLN6-221ENST00000637494 DPEP3Q9H4B8 488 aa20.18■□□□□ 0.82
CLN6-221ENST00000637494 EBF3Q9H4W6 596 aa20.18■□□□□ 0.82
CLN6-221ENST00000637494 HOOK1Q9UJC3 728 aaKnown RBP20.18■□□□□ 0.82
CLN6-221ENST00000637494 CDH8P55286 799 aa20.17■□□□□ 0.82
CLN6-221ENST00000637494 NOP14P78316 857 aaKnown RBP20.17■□□□□ 0.82
CLN6-221ENST00000637494 DLG4P78352 724 aa20.17■□□□□ 0.82
CLN6-221ENST00000637494 GRSF1Q12849 480 aaKnown RBP eCLIP20.17■□□□□ 0.82
CLN6-221ENST00000637494 TSSK4Q6SA08 328 aa20.17■□□□□ 0.82
CLN6-221ENST00000637494 SV2AQ7L0J3 742 aa20.17■□□□□ 0.82
CLN6-221ENST00000637494 FAM186BQ8IYM0 893 aa20.17■□□□□ 0.82
CLN6-221ENST00000637494 CPA6Q8N4T0 437 aa20.17■□□□□ 0.82
CLN6-221ENST00000637494 ARL14EPQ8N8R7 260 aaPredicted RBP20.17■□□□□ 0.82
CLN6-221ENST00000637494 CYP2S1Q96SQ9 504 aa20.17■□□□□ 0.82
CLN6-221ENST00000637494 DUS2Q9NX74 493 aaKnown RBP20.17■□□□□ 0.82
CLN6-221ENST00000637494 DENND4CQ5VZ89 1909 aa20.17■□□□□ 0.82
CLN6-221ENST00000637494 ZNF638Q14966 1978 aaKnown RBP20.17■□□□□ 0.82
CLN6-221ENST00000637494 OBSL1O75147 1896 aa20.16■□□□□ 0.82
CLN6-221ENST00000637494 C2orf78A6NCI8 922 aa20.16■□□□□ 0.82
CLN6-221ENST00000637494 RTN3O95197 1032 aaPredicted RBP20.16■□□□□ 0.82
CLN6-221ENST00000637494 VNN1O95497 513 aa20.16■□□□□ 0.82
CLN6-221ENST00000637494 ABL1P00519 1130 aa20.16■□□□□ 0.82
CLN6-221ENST00000637494 RAP1GAPP47736 663 aa20.16■□□□□ 0.82
CLN6-221ENST00000637494 IFRD2Q12894 506 aaPredicted RBP20.16■□□□□ 0.82
CLN6-221ENST00000637494 NR1H3Q13133 447 aa20.16■□□□□ 0.82
CLN6-221ENST00000637494 ADAM9Q13443 819 aa20.16■□□□□ 0.82
CLN6-221ENST00000637494 TXNDC11Q6PKC3 985 aa20.16■□□□□ 0.82
CLN6-221ENST00000637494 PDZD8Q8NEN9 1154 aa20.16■□□□□ 0.82
CLN6-221ENST00000637494 SECISBP2LQ93073 1101 aaKnown RBP20.16■□□□□ 0.82
CLN6-221ENST00000637494 ATP2A3Q93084 1043 aa20.16■□□□□ 0.82
CLN6-221ENST00000637494 TTLL2Q9BWV7 592 aa20.16■□□□□ 0.82
CLN6-221ENST00000637494 B3GNT5Q9BYG0 378 aa20.16■□□□□ 0.82
CLN6-221ENST00000637494 ZNF518BQ9C0D4 1074 aa20.16■□□□□ 0.82
CLN6-221ENST00000637494 SMC2O95347 1197 aa20.15■□□□□ 0.82
CLN6-221ENST00000637494 ENPEPQ07075 957 aa20.15■□□□□ 0.82
CLN6-221ENST00000637494 TRIM68Q6AZZ1 485 aa20.15■□□□□ 0.82
CLN6-221ENST00000637494 UNC93AQ86WB7 457 aa20.15■□□□□ 0.82
CLN6-221ENST00000637494 NUP93Q8N1F7 819 aa20.15■□□□□ 0.82
CLN6-221ENST00000637494 ZBTB44Q8NCP5 570 aa20.15■□□□□ 0.82
CLN6-221ENST00000637494 SH3RF2Q8TEC5 729 aa20.15■□□□□ 0.82
CLN6-221ENST00000637494 OSCP1Q8WVF1 389 aa20.15■□□□□ 0.82
CLN6-221ENST00000637494 RUBCNQ92622 972 aa20.15■□□□□ 0.82
CLN6-221ENST00000637494 SMARCD1Q96GM5 515 aa20.15■□□□□ 0.82
CLN6-221ENST00000637494 GTPBP4Q9BZE4 634 aaKnown RBP20.15■□□□□ 0.82
CLN6-221ENST00000637494 DMAP1Q9NPF5 467 aaPredicted RBP20.15■□□□□ 0.82
CLN6-221ENST00000637494 HPS4Q9NQG7 708 aa20.15■□□□□ 0.82
CLN6-221ENST00000637494 RBM12Q9NTZ6 932 aaKnown RBP20.15■□□□□ 0.82
CLN6-221ENST00000637494 GCNT4Q9P109 453 aa20.15■□□□□ 0.82
CLN6-221ENST00000637494 ARHGAP26Q9UNA1 814 aa20.15■□□□□ 0.82
CLN6-221ENST00000637494 NME7Q9Y5B8 376 aa20.15■□□□□ 0.82
CLN6-221ENST00000637494 ZFHX2Q9C0A1 2572 aaPredicted RBP20.14■□□□□ 0.82
CLN6-221ENST00000637494 CLDN5O00501 218 aa20.14■□□□□ 0.81
CLN6-221ENST00000637494 STX10O60499 249 aa20.14■□□□□ 0.81
CLN6-221ENST00000637494 AKAP3O75969 853 aa20.14■□□□□ 0.81
CLN6-221ENST00000637494 ASS1P00966 412 aaKnown RBP20.14■□□□□ 0.81
CLN6-221ENST00000637494 HLA-DRAP01903 254 aa20.14■□□□□ 0.81
CLN6-221ENST00000637494 YWHAQP27348 245 aa20.14■□□□□ 0.81
CLN6-221ENST00000637494 USP46P62068 366 aa20.14■□□□□ 0.81
CLN6-221ENST00000637494 USP4Q13107 963 aa20.14■□□□□ 0.81
CLN6-221ENST00000637494 ZNF77Q15935 545 aa20.14■□□□□ 0.81
CLN6-221ENST00000637494 EDRF1Q3B7T1 1238 aa20.14■□□□□ 0.81
CLN6-221ENST00000637494 ACOT1Q86TX2 421 aa20.14■□□□□ 0.81
CLN6-221ENST00000637494 FAM35AQ86V20 835 aa20.14■□□□□ 0.81
CLN6-221ENST00000637494 SLC22A12Q96S37 553 aa20.14■□□□□ 0.81
CLN6-221ENST00000637494 TSG101Q99816 390 aa20.14■□□□□ 0.81
CLN6-221ENST00000637494 NCDNQ9UBB6 729 aa20.14■□□□□ 0.81
CLN6-221ENST00000637494 RAB23Q9ULC3 237 aa20.14■□□□□ 0.81
CLN6-221ENST00000637494 CETN3O15182 167 aa20.13■□□□□ 0.81
CLN6-221ENST00000637494 ATG13O75143 517 aa20.13■□□□□ 0.81
CLN6-221ENST00000637494 EPB41P11171 864 aaKnown RBP20.13■□□□□ 0.81
CLN6-221ENST00000637494 ARSAP15289 507 aa20.13■□□□□ 0.81
CLN6-221ENST00000637494 TCF3P15923 654 aa20.13■□□□□ 0.81
CLN6-221ENST00000637494 GCLMP48507 274 aa20.13■□□□□ 0.81
CLN6-221ENST00000637494 TAF10Q12962 218 aa20.13■□□□□ 0.81
CLN6-221ENST00000637494 PNOCQ13519 176 aa20.13■□□□□ 0.81
CLN6-221ENST00000637494 DDX42Q86XP3 938 aaKnown RBP eCLIP20.13■□□□□ 0.81
CLN6-221ENST00000637494 OVCA2Q8WZ82 227 aa20.13■□□□□ 0.81
CLN6-221ENST00000637494 NELL1Q92832 810 aa20.13■□□□□ 0.81
CLN6-221ENST00000637494 FBXO32Q969P5 355 aa20.13■□□□□ 0.81
CLN6-221ENST00000637494 GSDMAQ96QA5 445 aa20.13■□□□□ 0.81
CLN6-221ENST00000637494 MMRN2Q9H8L6 949 aa20.13■□□□□ 0.81
CLN6-221ENST00000637494 ECT2Q9H8V3 914 aa20.13■□□□□ 0.81
CLN6-221ENST00000637494 COMMD8Q9NX08 183 aa20.13■□□□□ 0.81
CLN6-221ENST00000637494 PTPRDP23468 1912 aa20.12■□□□□ 0.81
CLN6-221ENST00000637494 KIF26AQ9ULI4 1882 aaPredicted RBP20.12■□□□□ 0.81
CLN6-221ENST00000637494 ZNF840PA6NDX5 716 aa20.12■□□□□ 0.81
CLN6-221ENST00000637494 TRDMT1O14717 391 aaKnown RBP20.12■□□□□ 0.81
CLN6-221ENST00000637494 AP1G2O75843 785 aa20.12■□□□□ 0.81
CLN6-221ENST00000637494 NFATC1O95644 943 aa20.12■□□□□ 0.81
CLN6-221ENST00000637494 TRIM49P0CI25 452 aa20.12■□□□□ 0.81
CLN6-221ENST00000637494 TRIM49CP0CI26 452 aa20.12■□□□□ 0.81
CLN6-221ENST00000637494 DRD1P21728 446 aa20.12■□□□□ 0.81
CLN6-221ENST00000637494 NDST1P52848 882 aa20.12■□□□□ 0.81
CLN6-221ENST00000637494 SATB1Q01826 763 aa20.12■□□□□ 0.81
CLN6-221ENST00000637494 CCINQ13939 588 aa20.12■□□□□ 0.81
CLN6-221ENST00000637494 FMR1NBQ8N0W7 255 aaPredicted RBP20.12■□□□□ 0.81
CLN6-221ENST00000637494 SMARCE1Q969G3 411 aa20.12■□□□□ 0.81
CLN6-221ENST00000637494 ELMO3Q96BJ8 720 aa20.12■□□□□ 0.81
CLN6-221ENST00000637494 P2RY13Q9BPV8 354 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms