RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 AP1G2O75843 785 aa19.4■□□□□ 0.7
CLN3-254ENST00000637050 CTNNA2P26232 953 aa19.4■□□□□ 0.7
CLN3-254ENST00000637050 SLC6A3Q01959 620 aa19.4■□□□□ 0.7
CLN3-254ENST00000637050 FAM102AQ5T9C2 384 aaPredicted RBP19.4■□□□□ 0.7
CLN3-254ENST00000637050 SCUBE3Q8IX30 993 aa19.4■□□□□ 0.7
CLN3-254ENST00000637050 NIPA2Q8N8Q9 360 aa19.4■□□□□ 0.7
CLN3-254ENST00000637050 LRRN4CLQ8ND94 238 aa19.4■□□□□ 0.7
CLN3-254ENST00000637050 JOSD2Q8TAC2 188 aa19.4■□□□□ 0.7
CLN3-254ENST00000637050 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.4■□□□□ 0.7
CLN3-254ENST00000637050 PBKQ96KB5 322 aa19.4■□□□□ 0.7
CLN3-254ENST00000637050 CAPZA3Q96KX2 299 aa19.4■□□□□ 0.7
CLN3-254ENST00000637050 UBXN6Q9BZV1 441 aa19.4■□□□□ 0.7
CLN3-254ENST00000637050 TMEM59LQ9UK28 342 aa19.4■□□□□ 0.7
CLN3-254ENST00000637050 CCDC66A2RUB6 948 aa19.39■□□□□ 0.69
CLN3-254ENST00000637050 CTNNA1P35221 906 aaKnown RBP19.39■□□□□ 0.69
CLN3-254ENST00000637050 GTF2F1P35269 517 aaKnown RBP eCLIP19.39■□□□□ 0.69
CLN3-254ENST00000637050 SCNN1AP37088 669 aa19.39■□□□□ 0.69
CLN3-254ENST00000637050 PEX5P50542 639 aa19.39■□□□□ 0.69
CLN3-254ENST00000637050 MAP3K7CLP57077 242 aa19.39■□□□□ 0.69
CLN3-254ENST00000637050 PIGHQ14442 188 aaPredicted RBP19.39■□□□□ 0.69
CLN3-254ENST00000637050 CEP57Q86XR8 500 aa19.39■□□□□ 0.69
CLN3-254ENST00000637050 UBL4BQ8N7F7 174 aa19.39■□□□□ 0.69
CLN3-254ENST00000637050 MNS1Q8NEH6 495 aa19.39■□□□□ 0.69
CLN3-254ENST00000637050 ZMIZ2Q8NF64 920 aa19.39■□□□□ 0.69
CLN3-254ENST00000637050 KRT35Q92764 455 aa19.39■□□□□ 0.69
CLN3-254ENST00000637050 IGSF21Q96ID5 467 aa19.39■□□□□ 0.69
CLN3-254ENST00000637050 PIWIL1Q96J94 861 aaKnown RBP19.39■□□□□ 0.69
CLN3-254ENST00000637050 TMEM30AQ9NV96 361 aa19.39■□□□□ 0.69
CLN3-254ENST00000637050 RNF14Q9UBS8 474 aa19.39■□□□□ 0.69
CLN3-254ENST00000637050 PCDHA3Q9Y5H8 950 aa19.39■□□□□ 0.69
CLN3-254ENST00000637050 PTPRSQ13332 1948 aa19.39■□□□□ 0.69
CLN3-254ENST00000637050 PDE2AO00408 941 aaPredicted RBP19.38■□□□□ 0.69
CLN3-254ENST00000637050 CDR1P51861 262 aa19.38■□□□□ 0.69
CLN3-254ENST00000637050 CACNA2D1P54289 1103 aa19.38■□□□□ 0.69
CLN3-254ENST00000637050 EPHB4P54760 987 aa19.38■□□□□ 0.69
CLN3-254ENST00000637050 CKAP4Q07065 602 aaKnown RBP19.38■□□□□ 0.69
CLN3-254ENST00000637050 BTG3Q14201 252 aaPredicted RBP19.38■□□□□ 0.69
CLN3-254ENST00000637050 CTXN3Q4LDR2 81 aa19.38■□□□□ 0.69
CLN3-254ENST00000637050 ZNF280DQ6N043 979 aa19.38■□□□□ 0.69
CLN3-254ENST00000637050 KCNT2Q6UVM3 1135 aa19.38■□□□□ 0.69
CLN3-254ENST00000637050 RNF168Q8IYW5 571 aaPredicted RBP19.38■□□□□ 0.69
CLN3-254ENST00000637050 DCP1BQ8IZD4 617 aaKnown RBP19.38■□□□□ 0.69
CLN3-254ENST00000637050 ALG3Q92685 438 aa19.38■□□□□ 0.69
CLN3-254ENST00000637050 KHSRPQ92945 711 aaKnown RBP eCLIP19.38■□□□□ 0.69
CLN3-254ENST00000637050 RHOBTB2Q9BYZ6 727 aa19.38■□□□□ 0.69
CLN3-254ENST00000637050 NLRC5Q86WI3 1866 aa19.38■□□□□ 0.69
CLN3-254ENST00000637050 OR6C75A6NL08 312 aa19.37■□□□□ 0.69
CLN3-254ENST00000637050 TBC1D4O60343 1298 aa19.37■□□□□ 0.69
CLN3-254ENST00000637050 LCP1P13796 627 aa19.37■□□□□ 0.69
CLN3-254ENST00000637050 BDNFP23560 247 aa19.37■□□□□ 0.69
CLN3-254ENST00000637050 MARCKSL1P49006 195 aa19.37■□□□□ 0.69
CLN3-254ENST00000637050 RTP2Q5QGT7 225 aa19.37■□□□□ 0.69
CLN3-254ENST00000637050 TMEM240Q5SV17 173 aa19.37■□□□□ 0.69
CLN3-254ENST00000637050 DCAF12L1Q5VU92 463 aa19.37■□□□□ 0.69
CLN3-254ENST00000637050 PSRC1Q6PGN9 363 aaPredicted RBP19.37■□□□□ 0.69
CLN3-254ENST00000637050 C4orf50Q6ZRC1 276 aa19.37■□□□□ 0.69
CLN3-254ENST00000637050 ZNF572Q7Z3I7 529 aaPredicted RBP19.37■□□□□ 0.69
CLN3-254ENST00000637050 EMC1Q8N766 993 aa19.37■□□□□ 0.69
CLN3-254ENST00000637050 B3GALT6Q96L58 329 aa19.37■□□□□ 0.69
CLN3-254ENST00000637050 ZNF558Q96NG5 402 aa19.37■□□□□ 0.69
CLN3-254ENST00000637050 KCNK16Q96T55 309 aa19.37■□□□□ 0.69
CLN3-254ENST00000637050 TTPALQ9BTX7 342 aa19.37■□□□□ 0.69
CLN3-254ENST00000637050 CARD9Q9H257 536 aa19.37■□□□□ 0.69
CLN3-254ENST00000637050 MRPL42Q9Y6G3 142 aaKnown RBP19.37■□□□□ 0.69
CLN3-254ENST00000637050 CARNS1A5YM72 827 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 ZBBXA8MT70 800 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 HHLA1C9JL84 531 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 OR4Q2P0C623 313 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 LAG3P18627 525 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 SLC39A12Q504Y0 691 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 RAB41Q5JT25 222 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 ANKS3Q6ZW76 656 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 SLC26A9Q7LBE3 791 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 TAS1R1Q7RTX1 841 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 SPATA2LQ8IUW3 424 aaPredicted RBP19.36■□□□□ 0.69
CLN3-254ENST00000637050 YME1L1Q96TA2 773 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.36■□□□□ 0.693e-6■□□□□ 10.1
CLN3-254ENST00000637050 HTATIP2Q9BUP3 242 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 OXCT2Q9BYC2 517 aaPredicted RBP19.36■□□□□ 0.69
CLN3-254ENST00000637050 C2CD4BA6NLJ0 364 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 F8VP50 259 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 H7C4K7 107 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 CTIFO43310 598 aaKnown RBP19.36■□□□□ 0.69
CLN3-254ENST00000637050 TADA3O75528 432 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 GJB5O95377 273 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 PSMA2P25787 234 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 HTRA4P83105 476 aaPredicted RBP19.36■□□□□ 0.69
CLN3-254ENST00000637050 ADIGQ0VDE8 80 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 NFE2Q16621 373 aaPredicted RBP19.36■□□□□ 0.69
CLN3-254ENST00000637050 CFAP221Q4G0U5 840 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 SPOUT1Q5T280 376 aaKnown RBP19.36■□□□□ 0.69
CLN3-254ENST00000637050 TRNP1Q6NT89 227 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 ARCQ7LC44 396 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 SLC39A11Q8N1S5 342 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 RASGEF1CQ8N431 466 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 CLEC4CQ8WTT0 213 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 MS4A14Q96JA4 679 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 VN1R3Q9BXE9 311 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 LRRC4Q9HBW1 653 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 PNPLA8Q9NP80 782 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms