RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 C8orf48Q96LL4 319 aa19.67■□□□□ 0.74
CLN3-241ENST00000635861 SNX25Q9H3E2 840 aa19.67■□□□□ 0.74
CLN3-241ENST00000635861 C2orf42Q9NWW7 574 aa19.67■□□□□ 0.74
CLN3-241ENST00000635861 TRPM5Q9NZQ8 1165 aa19.67■□□□□ 0.74
CLN3-241ENST00000635861 ZSCAN22P10073 491 aaPredicted RBP19.66■□□□□ 0.74
CLN3-241ENST00000635861 GALK1P51570 392 aa19.66■□□□□ 0.74
CLN3-241ENST00000635861 AP3M2P53677 418 aa19.66■□□□□ 0.74
CLN3-241ENST00000635861 CYP27A1Q02318 531 aa19.66■□□□□ 0.74
CLN3-241ENST00000635861 CCDC142Q17RM4 750 aa19.66■□□□□ 0.74
CLN3-241ENST00000635861 EML3Q32P44 896 aa19.66■□□□□ 0.74
CLN3-241ENST00000635861 PRR23CQ6ZRP0 262 aa19.66■□□□□ 0.74
CLN3-241ENST00000635861 CD101Q93033 1021 aa19.66■□□□□ 0.74
CLN3-241ENST00000635861 SYAP1Q96A49 352 aaPredicted RBP19.66■□□□□ 0.74
CLN3-241ENST00000635861 ACDQ96AP0 544 aa19.66■□□□□ 0.74
CLN3-241ENST00000635861 SLC22A12Q96S37 553 aa19.66■□□□□ 0.74
CLN3-241ENST00000635861 CYP2S1Q96SQ9 504 aa19.66■□□□□ 0.74
CLN3-241ENST00000635861 CFAP45Q9UL16 551 aa19.66■□□□□ 0.74
CLN3-241ENST00000635861 NUP205Q92621 2012 aa19.65■□□□□ 0.74
CLN3-241ENST00000635861 MYOFQ9NZM1 2061 aa19.65■□□□□ 0.74
CLN3-241ENST00000635861 RNF40O75150 1001 aa19.65■□□□□ 0.74
CLN3-241ENST00000635861 NFATC1O95644 943 aa19.65■□□□□ 0.74
CLN3-241ENST00000635861 F13A1P00488 732 aa19.65■□□□□ 0.74
CLN3-241ENST00000635861 CST3P01034 146 aaPredicted RBP19.65■□□□□ 0.74
CLN3-241ENST00000635861 EGFP01133 1207 aa19.65■□□□□ 0.74
CLN3-241ENST00000635861 TRPC3Q13507 836 aa19.65■□□□□ 0.74
CLN3-241ENST00000635861 WDR72Q3MJ13 1102 aa19.65■□□□□ 0.74
CLN3-241ENST00000635861 CACNA2D4Q7Z3S7 1137 aa19.65■□□□□ 0.74
CLN3-241ENST00000635861 FAM160A2Q8N612 972 aaPredicted RBP19.65■□□□□ 0.74
CLN3-241ENST00000635861 ARL14EPQ8N8R7 260 aaPredicted RBP19.65■□□□□ 0.74
CLN3-241ENST00000635861 RDH13Q8NBN7 331 aa19.65■□□□□ 0.74
CLN3-241ENST00000635861 SH3RF2Q8TEC5 729 aa19.65■□□□□ 0.74
CLN3-241ENST00000635861 TMEM174Q8WUU8 243 aa19.65■□□□□ 0.74
CLN3-241ENST00000635861 ELOVL4Q9GZR5 314 aa19.65■□□□□ 0.74
CLN3-241ENST00000635861 VRTNQ9H8Y1 702 aa19.65■□□□□ 0.74
CLN3-241ENST00000635861 C2orf78A6NCI8 922 aa19.64■□□□□ 0.73
CLN3-241ENST00000635861 SLC30A4O14863 429 aa19.64■□□□□ 0.73
CLN3-241ENST00000635861 CLIC2O15247 247 aa19.64■□□□□ 0.73
CLN3-241ENST00000635861 RPP40O75818 363 aaKnown RBP19.64■□□□□ 0.73
CLN3-241ENST00000635861 PDGFRBP09619 1106 aa19.64■□□□□ 0.73
CLN3-241ENST00000635861 CYP2J2P51589 502 aa19.64■□□□□ 0.73
CLN3-241ENST00000635861 SLC7A9P82251 487 aa19.64■□□□□ 0.73
CLN3-241ENST00000635861 SRSF5Q13243 272 aaKnown RBP19.64■□□□□ 0.73
CLN3-241ENST00000635861 KNOP1Q1ED39 458 aaKnown RBP19.64■□□□□ 0.73
CLN3-241ENST00000635861 RESP18Q5W5W9 173 aa19.64■□□□□ 0.73
CLN3-241ENST00000635861 PKN3Q6P5Z2 889 aa19.64■□□□□ 0.73
CLN3-241ENST00000635861 SYT13Q7L8C5 426 aa19.64■□□□□ 0.73
CLN3-241ENST00000635861 HSCBQ8IWL3 235 aa19.64■□□□□ 0.73
CLN3-241ENST00000635861 NELFCDQ8IXH7 590 aa19.64■□□□□ 0.73
CLN3-241ENST00000635861 OR6B3Q8NGW1 331 aa19.64■□□□□ 0.73
CLN3-241ENST00000635861 CCDC127Q96BQ5 260 aa19.64■□□□□ 0.73
CLN3-241ENST00000635861 MRPL45Q9BRJ2 306 aaKnown RBP19.64■□□□□ 0.73
CLN3-241ENST00000635861 DYNC1LI1Q9Y6G9 523 aaKnown RBP19.64■□□□□ 0.73
CLN3-241ENST00000635861 LAMA1P25391 3075 aa19.64■□□□□ 0.73
CLN3-241ENST00000635861 CNOT1A5YKK6 2376 aaKnown RBP19.64■□□□□ 0.73
CLN3-241ENST00000635861 TPRP12270 2363 aaKnown RBP19.64■□□□□ 0.73
CLN3-241ENST00000635861 OLFM2O95897 454 aa19.63■□□□□ 0.73
CLN3-241ENST00000635861 HSP90AA1P07900 732 aaKnown RBP19.63■□□□□ 0.73
CLN3-241ENST00000635861 ME1P48163 572 aa19.63■□□□□ 0.73
CLN3-241ENST00000635861 MDH1BQ5I0G3 518 aa19.63■□□□□ 0.73
CLN3-241ENST00000635861 CEP57L1Q8IYX8 460 aa19.63■□□□□ 0.73
CLN3-241ENST00000635861 ZC3H10Q96K80 434 aaKnown RBP19.63■□□□□ 0.73
CLN3-241ENST00000635861 SLITRK1Q96PX8 696 aa19.63■□□□□ 0.73
CLN3-241ENST00000635861 PCDHA7Q9UN72 937 aa19.63■□□□□ 0.73
CLN3-241ENST00000635861 PCDHGA5Q9Y5G8 931 aa19.63■□□□□ 0.73
CLN3-241ENST00000635861 WNT6Q9Y6F9 365 aa19.63■□□□□ 0.73
CLN3-241ENST00000635861 ZNF840PA6NDX5 716 aa19.62■□□□□ 0.73
CLN3-241ENST00000635861 F8VP50 259 aa19.62■□□□□ 0.73
CLN3-241ENST00000635861 SLC9A3R1O14745 358 aaPredicted RBP19.62■□□□□ 0.73
CLN3-241ENST00000635861 ATP8B3O60423 1300 aa19.62■□□□□ 0.73
CLN3-241ENST00000635861 EXOC3O60645 756 aa19.62■□□□□ 0.73
CLN3-241ENST00000635861 EPN2O95208 641 aa19.62■□□□□ 0.73
CLN3-241ENST00000635861 PTPN1P18031 435 aaKnown RBP19.62■□□□□ 0.73
CLN3-241ENST00000635861 RAP1GAPP47736 663 aa19.62■□□□□ 0.73
CLN3-241ENST00000635861 PSMD2Q13200 908 aa19.62■□□□□ 0.73
CLN3-241ENST00000635861 TDRD10Q5VZ19 366 aaKnown RBP19.62■□□□□ 0.73
CLN3-241ENST00000635861 DDX42Q86XP3 938 aaKnown RBP eCLIP19.62■□□□□ 0.73
CLN3-241ENST00000635861 PDZD8Q8NEN9 1154 aa19.62■□□□□ 0.73
CLN3-241ENST00000635861 OVCA2Q8WZ82 227 aa19.62■□□□□ 0.73
CLN3-241ENST00000635861 DDX1Q92499 740 aaKnown RBP19.62■□□□□ 0.73
CLN3-241ENST00000635861 FBRSL1Q9HCM7 1045 aaKnown RBP19.62■□□□□ 0.73
CLN3-241ENST00000635861 EBF1Q9UH73 591 aa19.62■□□□□ 0.73
CLN3-241ENST00000635861 MYO18AQ92614 2054 aaKnown RBP19.62■□□□□ 0.73
CLN3-241ENST00000635861 THADAQ6YHU6 1953 aa19.62■□□□□ 0.73
CLN3-241ENST00000635861 A8MXQ7 604 aa19.61■□□□□ 0.73
CLN3-241ENST00000635861 CCDC192P0DO97 292 aa19.61■□□□□ 0.73
CLN3-241ENST00000635861 LIMK1P53667 647 aa19.61■□□□□ 0.73
CLN3-241ENST00000635861 USP46P62068 366 aa19.61■□□□□ 0.73
CLN3-241ENST00000635861 CLDN10P78369 228 aa19.61■□□□□ 0.73
CLN3-241ENST00000635861 SLC9A9Q8IVB4 645 aa19.61■□□□□ 0.73
CLN3-241ENST00000635861 B3GALNT2Q8NCR0 500 aa19.61■□□□□ 0.73
CLN3-241ENST00000635861 RPLP0P6Q8NHW5 317 aa19.61■□□□□ 0.73
CLN3-241ENST00000635861 ZNF516Q92618 1163 aa19.61■□□□□ 0.73
CLN3-241ENST00000635861 GZF1Q9H116 711 aaPredicted RBP19.61■□□□□ 0.73
CLN3-241ENST00000635861 XYLT2Q9H1B5 865 aa19.61■□□□□ 0.73
CLN3-241ENST00000635861 BLZF1Q9H2G9 400 aa19.61■□□□□ 0.73
CLN3-241ENST00000635861 SLC39A2Q9NP94 309 aa19.61■□□□□ 0.73
CLN3-241ENST00000635861 PLXND1Q9Y4D7 1925 aa19.61■□□□□ 0.73
CLN3-241ENST00000635861 LOC105378220A0A1B0GUY1 285 aaPredicted RBP19.6■□□□□ 0.73
CLN3-241ENST00000635861 LEFTY2O00292 366 aa19.6■□□□□ 0.73
CLN3-241ENST00000635861 AXIN1O15169 862 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms