RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 CCNL1Q9UK58 526 aaPredicted RBP1.42□□□□□ -2.18
SMARCB1-209ENST00000635578 G3BP2Q9UN86 482 aaKnown RBP1.42□□□□□ -2.18
SMARCB1-209ENST00000635578 SCAF8Q9UPN6 1271 aaKnown RBP1.42□□□□□ -2.18
SMARCB1-209ENST00000635578 SYNJ2O15056 1496 aa1.42□□□□□ -2.18
SMARCB1-209ENST00000635578 SAMD9Q5K651 1589 aa1.42□□□□□ -2.18
SMARCB1-209ENST00000635578 MROH2AA6NES4 1674 aa1.42□□□□□ -2.18
SMARCB1-209ENST00000635578 TNKSO95271 1327 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 CCDC154A6NI56 674 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 C4orf47A7E2U8 309 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 FAM171A2A8MVW0 826 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 LACTBL1A8MY62 500 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 B4DGG1 531 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 E7ENX8 843 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 E9PLN8 166 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 GABRDO14764 452 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 DSCR3O14972 297 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 DTNBO60941 627 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 ALDH1L1O75891 902 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 USP1O94782 785 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 PDE8BO95263 885 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 S100BP04271 92 aaPredicted RBP1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 IL6RP08887 468 aaPredicted RBP1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 CYP2A6P11509 494 aaPredicted RBP1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 ITGALP20701 1170 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 C5AR1P21730 350 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 SMARCA1P28370 1054 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 LIPAP38571 399 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 RECQLP46063 649 aaPredicted RBP1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 HILS1P60008 231 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 PSMC1P62191 440 aaKnown RBP1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 POU6F2P78424 691 aaPredicted RBP1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 TAP2Q03519 686 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 ZNF91Q05481 1191 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 IL10RAQ13651 578 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 ANO4Q32M45 955 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 PABPC1LQ4VXU2 614 aaKnown RBP1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 TREML2Q5T2D2 321 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 C10orf25Q5T742 122 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 ZNF618Q5T7W0 954 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 TEDDM1Q5T9Z0 273 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 GFI1BQ5VTD9 330 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 TAF2Q6P1X5 1199 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 LVRNQ6Q4G3 990 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 KIRREL2Q6UWL6 708 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 SERPINA13PQ6UXR4 307 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 COLCA1Q6ZS62 124 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 KCNK18Q7Z418 384 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 MAVSQ7Z434 540 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 NR2C2APQ86WQ0 139 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 TMPRSS12Q86WS5 348 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 RFX6Q8HWS3 928 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 ADHFE1Q8IWW8 467 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 GRAMD1CQ8IYS0 662 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 AOPEPQ8N6M6 819 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 PCSK9Q8NBP7 692 aaKnown RBP1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 ZNF548Q8NEK5 533 aaPredicted RBP1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 KAT5Q92993 513 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 DAZAP1Q96EP5 407 aaKnown RBP1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 HSPBAP1Q96EW2 488 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 WBP1Q96G27 269 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 CLPTM1LQ96KA5 538 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 TEKT5Q96M29 485 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 VRK1Q99986 396 aaPredicted RBP1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 VKORC1Q9BQB6 163 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 EFHD1Q9BUP0 239 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 FAM234AQ9H0X4 552 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 MAN1C1Q9NR34 630 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 MRPS18AQ9NVS2 196 aaKnown RBP1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 DDX56Q9NY93 547 aaKnown RBP1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 ZNF180Q9UJW8 692 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 NOB1Q9ULX3 412 aaKnown RBP1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 ADAMTS5Q9UNA0 930 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 CFAP74Q9C0B2 1584 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 OBSCNQ5VST9 7968 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 AKAP12Q02952 1782 aa1.41□□□□□ -2.18
SMARCB1-209ENST00000635578 ABCA10Q8WWZ4 1543 aa1.4□□□□□ -2.18
SMARCB1-209ENST00000635578 ABCA3Q99758 1704 aa1.4□□□□□ -2.18
SMARCB1-209ENST00000635578 MARF1Q9Y4F3 1742 aaKnown RBP1.4□□□□□ -2.18
SMARCB1-209ENST00000635578 VIRMAQ69YN4 1812 aaKnown RBP1.4□□□□□ -2.18
SMARCB1-209ENST00000635578 WNK3Q9BYP7 1800 aa1.4□□□□□ -2.18
SMARCB1-209ENST00000635578 RGPD8O14715 1765 aaPredicted RBP1.4□□□□□ -2.19
SMARCB1-209ENST00000635578 KIDINS220Q9ULH0 1771 aa1.4□□□□□ -2.19
SMARCB1-209ENST00000635578 IQGAP1P46940 1657 aa1.4□□□□□ -2.19
SMARCB1-209ENST00000635578 ZC3H13Q5T200 1668 aaKnown RBP1.4□□□□□ -2.19
SMARCB1-209ENST00000635578 ABCA8O94911 1581 aa1.4□□□□□ -2.19
SMARCB1-209ENST00000635578 DIP2CQ9Y2E4 1556 aa1.4□□□□□ -2.19
SMARCB1-209ENST00000635578 GRIN2BQ13224 1484 aa1.4□□□□□ -2.19
SMARCB1-209ENST00000635578 TDRD9Q8NDG6 1382 aaKnown RBP1.4□□□□□ -2.19
SMARCB1-209ENST00000635578 POC1B-GALNT4F8VUJ3 575 aa1.4□□□□□ -2.19
SMARCB1-209ENST00000635578 H3BUI4 141 aa1.4□□□□□ -2.19
SMARCB1-209ENST00000635578 HTRA2O43464 458 aaPredicted RBP1.4□□□□□ -2.19
SMARCB1-209ENST00000635578 PCDHGA12O60330 932 aa1.4□□□□□ -2.19
SMARCB1-209ENST00000635578 SLC43A1O75387 559 aa1.4□□□□□ -2.19
SMARCB1-209ENST00000635578 FTLP02792 175 aaPredicted RBP1.4□□□□□ -2.19
SMARCB1-209ENST00000635578 FESP07332 822 aa1.4□□□□□ -2.19
SMARCB1-209ENST00000635578 GNAI3P08754 354 aa1.4□□□□□ -2.19
SMARCB1-209ENST00000635578 PDGFRBP09619 1106 aa1.4□□□□□ -2.19
SMARCB1-209ENST00000635578 NPSP0C0P6 89 aa1.4□□□□□ -2.19
SMARCB1-209ENST00000635578 PF4V1P10720 104 aa1.4□□□□□ -2.19
SMARCB1-209ENST00000635578 PHKA1P46020 1223 aa1.4□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms