RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 LMO2P25791 158 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 ATICP31939 592 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 MAGEA4P43358 317 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 MMP13P45452 471 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 VCPP55072 806 aaKnown RBP11.15□□□□□ -0.62
CUX1-221ENST00000622516 TAP1Q03518 808 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 OASLQ15646 514 aaKnown RBP11.15□□□□□ -0.62
CUX1-221ENST00000622516 TUBB8Q3ZCM7 444 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 LRRC38Q5VT99 294 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 IQSEC1Q6DN90 963 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 SYDE1Q6ZW31 735 aaPredicted RBP11.15□□□□□ -0.62
CUX1-221ENST00000622516 CPLX4Q7Z7G2 160 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 ZNF467Q7Z7K2 595 aaPredicted RBP11.15□□□□□ -0.62
CUX1-221ENST00000622516 TLK2Q86UE8 772 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 TTC30AQ86WT1 665 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 XPO6Q96QU8 1125 aaKnown RBP11.15□□□□□ -0.62
CUX1-221ENST00000622516 GCOM2Q9BZD3 368 aaPredicted RBP11.15□□□□□ -0.62
CUX1-221ENST00000622516 NGRNQ9NPE2 291 aaKnown RBP11.15□□□□□ -0.62
CUX1-221ENST00000622516 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.15□□□□□ -0.623e-6■□□□□ 8.8
CUX1-221ENST00000622516 C2CD2Q9Y426 696 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 ATP2C2O75185 946 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 ADORA2BP29275 332 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 GRM5P41594 1212 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 HUNKP57058 714 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 HADHQ16836 314 aaKnown RBP11.15□□□□□ -0.62
CUX1-221ENST00000622516 RNF187Q5TA31 235 aaPredicted RBP11.15□□□□□ -0.62
CUX1-221ENST00000622516 ANKRD22Q5VYY1 191 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 UNC45BQ8IWX7 931 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 ZBED8Q8IZ13 594 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 NIPA2Q8N8Q9 360 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 FAM71DQ8N9W8 422 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 PRDM16Q9HAZ2 1276 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 INTS9Q9NV88 658 aaKnown RBP11.15□□□□□ -0.62
CUX1-221ENST00000622516 SLC5A4Q9NY91 659 aa11.15□□□□□ -0.62
CUX1-221ENST00000622516 DDX56Q9NY93 547 aaKnown RBP11.15□□□□□ -0.62
CUX1-221ENST00000622516 DDX20Q9UHI6 824 aaKnown RBP11.15□□□□□ -0.62
CUX1-221ENST00000622516 COL1A2P08123 1366 aa11.14□□□□□ -0.63
CUX1-221ENST00000622516 POC1B-GALNT4F8VUJ3 575 aa11.14□□□□□ -0.63
CUX1-221ENST00000622516 HMGCRP04035 888 aa11.14□□□□□ -0.63
CUX1-221ENST00000622516 KRT7P08729 469 aa11.14□□□□□ -0.63
CUX1-221ENST00000622516 CCDC130P13994 396 aa11.14□□□□□ -0.63
CUX1-221ENST00000622516 ATXN1P54253 815 aaKnown RBP11.14□□□□□ -0.63
CUX1-221ENST00000622516 CDH6P55285 790 aa11.14□□□□□ -0.63
CUX1-221ENST00000622516 ZNF268Q14587 947 aaPredicted RBP11.14□□□□□ -0.63
CUX1-221ENST00000622516 ZC3H12AQ5D1E8 599 aaKnown RBP11.14□□□□□ -0.63
CUX1-221ENST00000622516 ERMARDQ5T6L9 678 aa11.14□□□□□ -0.63
CUX1-221ENST00000622516 SLC27A1Q6PCB7 646 aa11.14□□□□□ -0.63
CUX1-221ENST00000622516 NDRG1Q92597 394 aaKnown RBP11.14□□□□□ -0.63
CUX1-221ENST00000622516 MCRS1Q96EZ8 462 aa11.14□□□□□ -0.63
CUX1-221ENST00000622516 CYP3A43Q9HB55 503 aa11.14□□□□□ -0.63
CUX1-221ENST00000622516 TCRBV7S3A2A0A539 114 aa11.14□□□□□ -0.63
CUX1-221ENST00000622516 DNALI1O14645 258 aaPredicted RBP11.14□□□□□ -0.63
CUX1-221ENST00000622516 SPTLC1O15269 473 aa11.14□□□□□ -0.63
CUX1-221ENST00000622516 GABBR2O75899 941 aa11.14□□□□□ -0.63
CUX1-221ENST00000622516 TRUB2O95900 331 aaKnown RBP11.14□□□□□ -0.63
CUX1-221ENST00000622516 AGTP01019 485 aa11.14□□□□□ -0.63
CUX1-221ENST00000622516 MPP2Q14168 576 aa11.14□□□□□ -0.63
CUX1-221ENST00000622516 C1orf228Q6PIY5 440 aa11.14□□□□□ -0.63
CUX1-221ENST00000622516 SRRM1Q8IYB3 904 aaKnown RBP11.14□□□□□ -0.63
CUX1-221ENST00000622516 CCDC13Q8IYE1 715 aa11.14□□□□□ -0.63
CUX1-221ENST00000622516 GDAP1Q8TB36 358 aa11.14□□□□□ -0.63
CUX1-221ENST00000622516 ATXN2LQ8WWM7 1075 aaKnown RBP11.14□□□□□ -0.63
CUX1-221ENST00000622516 VRTNQ9H8Y1 702 aa11.14□□□□□ -0.63
CUX1-221ENST00000622516 TPX2Q9ULW0 747 aaKnown RBP11.14□□□□□ -0.63
CUX1-221ENST00000622516 GNEQ9Y223 722 aaKnown RBP11.14□□□□□ -0.63
CUX1-221ENST00000622516 A6NJR5 290 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 A8MXQ7 604 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 RABGGTBP53611 331 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 CORO7P57737 925 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 INCA1Q0VD86 236 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 MFSD10Q14728 455 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 SOWAHAQ2M3V2 549 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 EP400NLQ6ZTU2 488 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 ZNF410Q86VK4 478 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 SNX27Q96L92 541 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 VPS37BQ9H9H4 285 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 NAALADL1Q9UQQ1 740 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 SLC45A1Q9Y2W3 748 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 TMEM120BA0PK00 339 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 MEIS3P2A8K0S8 358 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 FGFR1P11362 822 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 LCP1P13796 627 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 DARSP14868 501 aaKnown RBP11.13□□□□□ -0.63
CUX1-221ENST00000622516 GPD1P21695 349 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 SOX4Q06945 474 aaPredicted RBP11.13□□□□□ -0.63
CUX1-221ENST00000622516 PDIA2Q13087 525 aaKnown RBP11.13□□□□□ -0.63
CUX1-221ENST00000622516 MSS51Q4VC12 460 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 PPP6R3Q5H9R7 873 aaPredicted RBP11.13□□□□□ -0.63
CUX1-221ENST00000622516 NOTUMQ6P988 496 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 LCLAT1Q6UWP7 414 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 ZCCHC9Q8N567 271 aaKnown RBP11.13□□□□□ -0.63
CUX1-221ENST00000622516 NETO2Q8NC67 525 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 SLC35B2Q8TB61 432 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 SPATA18Q8TC71 538 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 RSAD2Q8WXG1 361 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 KIF9Q9HAQ2 790 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 HEY1Q9Y5J3 304 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 NRCAMQ92823 1304 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 C2CD4BA6NLJ0 364 aa11.13□□□□□ -0.63
CUX1-221ENST00000622516 F2P00734 622 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms