RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 MTF1Q14872 753 aa12.24□□□□□ -0.45
CPNE3-210ENST00000621245 CFAP221Q4G0U5 840 aa12.24□□□□□ -0.45
CPNE3-210ENST00000621245 TMEM196Q5HYL7 178 aa12.24□□□□□ -0.45
CPNE3-210ENST00000621245 MDH1BQ5I0G3 518 aa12.24□□□□□ -0.45
CPNE3-210ENST00000621245 CNNM4Q6P4Q7 775 aa12.24□□□□□ -0.45
CPNE3-210ENST00000621245 WDR49Q8IV35 697 aa12.24□□□□□ -0.45
CPNE3-210ENST00000621245 ARL14EPQ8N8R7 260 aaPredicted RBP12.24□□□□□ -0.45
CPNE3-210ENST00000621245 MRPS31Q92665 395 aaKnown RBP12.24□□□□□ -0.45
CPNE3-210ENST00000621245 SNX21Q969T3 373 aa12.24□□□□□ -0.45
CPNE3-210ENST00000621245 CCDC127Q96BQ5 260 aa12.24□□□□□ -0.45
CPNE3-210ENST00000621245 MYRFLQ96LU7 910 aa12.24□□□□□ -0.45
CPNE3-210ENST00000621245 ZNF396Q96N95 335 aaPredicted RBP12.24□□□□□ -0.45
CPNE3-210ENST00000621245 CGRRF1Q99675 332 aa12.24□□□□□ -0.45
CPNE3-210ENST00000621245 FAM126AQ9BYI3 521 aaPredicted RBP12.24□□□□□ -0.45
CPNE3-210ENST00000621245 EPG5Q9HCE0 2579 aa12.24□□□□□ -0.45
CPNE3-210ENST00000621245 SLC39A2Q9NP94 309 aa12.24□□□□□ -0.45
CPNE3-210ENST00000621245 USP18Q9UMW8 372 aa12.24□□□□□ -0.45
CPNE3-210ENST00000621245 PCDHA7Q9UN72 937 aa12.24□□□□□ -0.45
CPNE3-210ENST00000621245 TNRC6BQ9UPQ9 1833 aaKnown RBP12.24□□□□□ -0.45
CPNE3-210ENST00000621245 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.24□□□□□ -0.45
CPNE3-210ENST00000621245 CNOT1A5YKK6 2376 aaKnown RBP12.23□□□□□ -0.45
CPNE3-210ENST00000621245 ABCA7Q8IZY2 2146 aa12.23□□□□□ -0.45
CPNE3-210ENST00000621245 MYO18AQ92614 2054 aaKnown RBP12.23□□□□□ -0.45
CPNE3-210ENST00000621245 CLDN5O00501 218 aa12.23□□□□□ -0.45
CPNE3-210ENST00000621245 KLRC4O43908 158 aa12.23□□□□□ -0.45
CPNE3-210ENST00000621245 DDX6P26196 483 aaKnown RBP eCLIP12.23□□□□□ -0.45
CPNE3-210ENST00000621245 GJA4P35212 333 aa12.23□□□□□ -0.45
CPNE3-210ENST00000621245 AFMP43652 599 aa12.23□□□□□ -0.45
CPNE3-210ENST00000621245 RAP1GAPP47736 663 aa12.23□□□□□ -0.45
CPNE3-210ENST00000621245 LHX1P48742 406 aa12.23□□□□□ -0.45
CPNE3-210ENST00000621245 RPL10AP62906 217 aaKnown RBP12.23□□□□□ -0.45
CPNE3-210ENST00000621245 CYP27A1Q02318 531 aa12.23□□□□□ -0.45
CPNE3-210ENST00000621245 DNM1Q05193 864 aaKnown RBP12.23□□□□□ -0.45
CPNE3-210ENST00000621245 SIM2Q14190 667 aaPredicted RBP12.23□□□□□ -0.45
CPNE3-210ENST00000621245 PUM1Q14671 1186 aaKnown RBP eCLIP12.23□□□□□ -0.45
CPNE3-210ENST00000621245 PSMD6Q15008 389 aa12.23□□□□□ -0.45
CPNE3-210ENST00000621245 CCDC6Q16204 474 aa12.23□□□□□ -0.45
CPNE3-210ENST00000621245 DUOXA2Q1HG44 320 aa12.23□□□□□ -0.45
CPNE3-210ENST00000621245 GAB4Q2WGN9 574 aa12.23□□□□□ -0.45
CPNE3-210ENST00000621245 DGKKQ5KSL6 1271 aa12.23□□□□□ -0.45
CPNE3-210ENST00000621245 RESP18Q5W5W9 173 aa12.23□□□□□ -0.45
CPNE3-210ENST00000621245 UNC13DQ70J99 1090 aa12.23□□□□□ -0.45
CPNE3-210ENST00000621245 SFTPA1Q8IWL2 248 aa12.23□□□□□ -0.45
CPNE3-210ENST00000621245 KIAA0895Q8NCT3 520 aa12.23□□□□□ -0.45
CPNE3-210ENST00000621245 PCED1BQ96HM7 432 aa12.23□□□□□ -0.45
CPNE3-210ENST00000621245 ZNF518BQ9C0D4 1074 aa12.23□□□□□ -0.45
CPNE3-210ENST00000621245 SDCBP2Q9H190 292 aa12.23□□□□□ -0.45
CPNE3-210ENST00000621245 XYLT2Q9H1B5 865 aa12.23□□□□□ -0.45
CPNE3-210ENST00000621245 LINC00597Q9H2U6 94 aa12.23□□□□□ -0.45
CPNE3-210ENST00000621245 CUEDC2Q9H467 287 aa12.23□□□□□ -0.45
CPNE3-210ENST00000621245 SMYD3Q9H7B4 428 aa12.23□□□□□ -0.45
CPNE3-210ENST00000621245 CFAP47Q6ZTR5 3102 aa12.23□□□□□ -0.45
CPNE3-210ENST00000621245 THADAQ6YHU6 1953 aa12.23□□□□□ -0.45
CPNE3-210ENST00000621245 MAP1BP46821 2468 aaKnown RBP12.22□□□□□ -0.45
CPNE3-210ENST00000621245 UBE4BO95155 1302 aa12.22□□□□□ -0.45
CPNE3-210ENST00000621245 ACTN4O43707 911 aaKnown RBP12.22□□□□□ -0.45
CPNE3-210ENST00000621245 GDF9O60383 454 aa12.22□□□□□ -0.45
CPNE3-210ENST00000621245 RNF40O75150 1001 aa12.22□□□□□ -0.45
CPNE3-210ENST00000621245 CKMP06732 381 aa12.22□□□□□ -0.45
CPNE3-210ENST00000621245 PCSK1P29120 753 aa12.22□□□□□ -0.45
CPNE3-210ENST00000621245 MAGEA11P43364 429 aa12.22□□□□□ -0.45
CPNE3-210ENST00000621245 GALK1P51570 392 aa12.22□□□□□ -0.45
CPNE3-210ENST00000621245 ATXN1P54253 815 aaKnown RBP12.22□□□□□ -0.45
CPNE3-210ENST00000621245 MYL6P60660 151 aa12.22□□□□□ -0.45
CPNE3-210ENST00000621245 FOXK2Q01167 660 aa12.22□□□□□ -0.45
CPNE3-210ENST00000621245 MESP2Q0VG99 397 aa12.22□□□□□ -0.45
CPNE3-210ENST00000621245 ZNF268Q14587 947 aaPredicted RBP12.22□□□□□ -0.45
CPNE3-210ENST00000621245 BMT2Q1RMZ1 405 aa12.22□□□□□ -0.45
CPNE3-210ENST00000621245 EML3Q32P44 896 aa12.22□□□□□ -0.45
CPNE3-210ENST00000621245 LONP2Q86WA8 852 aa12.22□□□□□ -0.45
CPNE3-210ENST00000621245 FAM160A2Q8N612 972 aaPredicted RBP12.22□□□□□ -0.45
CPNE3-210ENST00000621245 IQUBQ8NA54 791 aa12.22□□□□□ -0.45
CPNE3-210ENST00000621245 SPATA18Q8TC71 538 aa12.22□□□□□ -0.45
CPNE3-210ENST00000621245 SH3RF2Q8TEC5 729 aa12.22□□□□□ -0.45
CPNE3-210ENST00000621245 FUBP3Q96I24 572 aaKnown RBP eCLIP12.22□□□□□ -0.45
CPNE3-210ENST00000621245 HHIPQ96QV1 700 aa12.22□□□□□ -0.45
CPNE3-210ENST00000621245 MMS19Q96T76 1030 aa12.22□□□□□ -0.45
CPNE3-210ENST00000621245 KIF9Q9HAQ2 790 aa12.22□□□□□ -0.45
CPNE3-210ENST00000621245 THG1LQ9NWX6 298 aaKnown RBP12.22□□□□□ -0.45
CPNE3-210ENST00000621245 MAGEC2Q9UBF1 373 aaPredicted RBP12.22□□□□□ -0.45
CPNE3-210ENST00000621245 SERTAD1Q9UHV2 236 aa12.22□□□□□ -0.45
CPNE3-210ENST00000621245 CDH9Q9ULB4 789 aa12.22□□□□□ -0.45
CPNE3-210ENST00000621245 ACACBO00763 2458 aa12.22□□□□□ -0.45
CPNE3-210ENST00000621245 TPRP12270 2363 aaKnown RBP12.22□□□□□ -0.45
CPNE3-210ENST00000621245 CEP192Q8TEP8 1941 aa12.21□□□□□ -0.45
CPNE3-210ENST00000621245 TRAV19A0A0A6YYK7 116 aa12.21□□□□□ -0.45
CPNE3-210ENST00000621245 DCDC2BA2VCK2 349 aa12.21□□□□□ -0.45
CPNE3-210ENST00000621245 LRRIQ3A6PVS8 624 aaPredicted RBP12.21□□□□□ -0.45
CPNE3-210ENST00000621245 F8VP50 259 aa12.21□□□□□ -0.45
CPNE3-210ENST00000621245 TRDMT1O14717 391 aaKnown RBP12.21□□□□□ -0.45
CPNE3-210ENST00000621245 KIAA0391O15091 583 aaKnown RBP12.21□□□□□ -0.45
CPNE3-210ENST00000621245 VNN1O95497 513 aa12.21□□□□□ -0.45
CPNE3-210ENST00000621245 TNNI1P19237 187 aa12.21□□□□□ -0.45
CPNE3-210ENST00000621245 ME1P48163 572 aa12.21□□□□□ -0.45
CPNE3-210ENST00000621245 NRLP54845 237 aa12.21□□□□□ -0.45
CPNE3-210ENST00000621245 CDH8P55286 799 aa12.21□□□□□ -0.45
CPNE3-210ENST00000621245 DLG4P78352 724 aa12.21□□□□□ -0.45
CPNE3-210ENST00000621245 FAM160A1Q05DH4 1040 aa12.21□□□□□ -0.45
CPNE3-210ENST00000621245 MYO1EQ12965 1108 aa12.21□□□□□ -0.45
CPNE3-210ENST00000621245 ORC1Q13415 861 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms