RNA–Protein interactions for RNA: ENST00000611848.1

SMAD4-217, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 1,648 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-217ENST00000611848 FAM171BQ6P995 826 aa9.38□□□□□ -0.91
SMAD4-217ENST00000611848 UNC93AQ86WB7 457 aa9.38□□□□□ -0.91
SMAD4-217ENST00000611848 TTC39CQ8N584 583 aa9.38□□□□□ -0.91
SMAD4-217ENST00000611848 SMG7Q92540 1137 aaKnown RBP9.38□□□□□ -0.91
SMAD4-217ENST00000611848 PGLYRP2Q96PD5 576 aa9.38□□□□□ -0.91
SMAD4-217ENST00000611848 SYT15Q9BQS2 421 aa9.38□□□□□ -0.91
SMAD4-217ENST00000611848 BCO2Q9BYV7 579 aa9.38□□□□□ -0.91
SMAD4-217ENST00000611848 NIF3L1Q9GZT8 377 aa9.38□□□□□ -0.91
SMAD4-217ENST00000611848 LACRTQ9GZZ8 138 aa9.38□□□□□ -0.91
SMAD4-217ENST00000611848 SMYD3Q9H7B4 428 aa9.38□□□□□ -0.91
SMAD4-217ENST00000611848 PIDD1Q9HB75 910 aa9.38□□□□□ -0.91
SMAD4-217ENST00000611848 APOBEC3GQ9HC16 384 aaKnown RBP9.38□□□□□ -0.91
SMAD4-217ENST00000611848 PLCB1Q9NQ66 1216 aa9.38□□□□□ -0.91
SMAD4-217ENST00000611848 ZNF446Q9NWS9 450 aa9.38□□□□□ -0.91
SMAD4-217ENST00000611848 PRKAG3Q9UGI9 489 aa9.38□□□□□ -0.91
SMAD4-217ENST00000611848 MYO6Q9UM54 1294 aa9.38□□□□□ -0.91
SMAD4-217ENST00000611848 PCDHB5Q9Y5E4 795 aa9.38□□□□□ -0.91
SMAD4-217ENST00000611848 INSL5Q9Y5Q6 135 aa9.38□□□□□ -0.91
SMAD4-217ENST00000611848 MYH10P35580 1976 aa9.38□□□□□ -0.91
SMAD4-217ENST00000611848 MYO10Q9HD67 2058 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 UNC80Q8N2C7 3258 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 PTPRDP23468 1912 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 PJA2O43164 708 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 VNN2O95498 520 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 PDGFRBP09619 1106 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 ASPAP45381 313 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 CDH8P55286 799 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 KIF5AQ12840 1032 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 SCARA5Q6ZMJ2 495 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 C4orf50Q6ZRC1 276 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 CACNA2D4Q7Z3S7 1137 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 ELMOD1Q8N336 334 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 ATAD1Q8NBU5 361 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 ELMO3Q96BJ8 720 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 ZNF707Q96C28 371 aaPredicted RBP9.37□□□□□ -0.91
SMAD4-217ENST00000611848 FUBP3Q96I24 572 aaKnown RBP eCLIP9.37□□□□□ -0.91
SMAD4-217ENST00000611848 TNIP3Q96KP6 325 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 PKMYT1Q99640 499 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 PHF7Q9BWX1 381 aaPredicted RBP9.37□□□□□ -0.91
SMAD4-217ENST00000611848 LSM14BQ9BX40 385 aaKnown RBP9.37□□□□□ -0.91
SMAD4-217ENST00000611848 MFRPQ9BY79 579 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 DNAI2Q9GZS0 605 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 SDCBP2Q9H190 292 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 GANQ9H2C0 597 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 ABCB6Q9NP58 842 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 TMLHEQ9NVH6 421 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 ARGLU1Q9NWB6 273 aaPredicted RBP9.37□□□□□ -0.91
SMAD4-217ENST00000611848 GTF3C4Q9UKN8 822 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 TFR2Q9UP52 801 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 PCDHA13Q9Y5I0 950 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 DOCK8Q8NF50 2099 aa9.37□□□□□ -0.91
SMAD4-217ENST00000611848 NOTCH4Q99466 2003 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 MYBPHLA2RUH7 354 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 CCL16O15467 120 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 HCRTO43612 131 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 LRRN2O75325 713 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 ZRANB2O95218 330 aaKnown RBP eCLIP9.36□□□□□ -0.91
SMAD4-217ENST00000611848 SERPING1P05155 500 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 WEE2P0C1S8 567 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 PTPN1P18031 435 aaKnown RBP9.36□□□□□ -0.91
SMAD4-217ENST00000611848 TBXAS1P24557 533 aaPredicted RBP9.36□□□□□ -0.91
SMAD4-217ENST00000611848 RAP1GAPP47736 663 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 ALDH1A3P47895 512 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 EPHB3P54753 998 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 YWHAEP62258 255 aaKnown RBP9.36□□□□□ -0.91
SMAD4-217ENST00000611848 CYP27A1Q02318 531 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 INCA1Q0VD86 236 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 TWF1Q12792 350 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 CFAP221Q4G0U5 840 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 SMYD5Q6GMV2 418 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 IQCEQ6IPM2 695 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 SPATA2LQ8IUW3 424 aaPredicted RBP9.36□□□□□ -0.91
SMAD4-217ENST00000611848 MYCBPAPQ8TBZ2 947 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 TATDN2Q93075 761 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 ZNF512Q96ME7 567 aaPredicted RBP9.36□□□□□ -0.91
SMAD4-217ENST00000611848 NT5C1BQ96P26 610 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 CRISPLD1Q9H336 500 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 POMKQ9H5K3 350 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 WDR6Q9NNW5 1121 aaKnown RBP9.36□□□□□ -0.91
SMAD4-217ENST00000611848 CRTAC1Q9NQ79 661 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.36□□□□□ -0.91
SMAD4-217ENST00000611848 ABI2Q9NYB9 513 aaPredicted RBP9.36□□□□□ -0.91
SMAD4-217ENST00000611848 AIPL1Q9NZN9 384 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 SLC27A5Q9Y2P5 690 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 YIPF1Q9Y548 306 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 ASB3Q9Y575 518 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 NME7Q9Y5B8 376 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 DENND4AQ7Z401 1863 aa9.36□□□□□ -0.91
SMAD4-217ENST00000611848 GTPBP10A4D1E9 387 aaKnown RBP9.35□□□□□ -0.91
SMAD4-217ENST00000611848 ATP8B1O43520 1251 aa9.35□□□□□ -0.91
SMAD4-217ENST00000611848 AKR1B10O60218 316 aa9.35□□□□□ -0.91
SMAD4-217ENST00000611848 ATP2C2O75185 946 aa9.35□□□□□ -0.91
SMAD4-217ENST00000611848 HAPLN1P10915 354 aaPredicted RBP9.35□□□□□ -0.91
SMAD4-217ENST00000611848 PTPN2P17706 415 aa9.35□□□□□ -0.91
SMAD4-217ENST00000611848 NDST1P52848 882 aa9.35□□□□□ -0.91
SMAD4-217ENST00000611848 POLR2FP61218 127 aaKnown RBP9.35□□□□□ -0.91
SMAD4-217ENST00000611848 PSMC1P62191 440 aaKnown RBP9.35□□□□□ -0.91
SMAD4-217ENST00000611848 CUL2Q13617 745 aa9.35□□□□□ -0.91
SMAD4-217ENST00000611848 MGAT5BQ3V5L5 792 aa9.35□□□□□ -0.91
SMAD4-217ENST00000611848 TEX35Q5T0J7 233 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms