RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 MYCBPAPQ8TBZ2 947 aa18.77■□□□□ 0.6
SHKBP1-223ENST00000600552 SCFD1Q8WVM8 642 aa18.77■□□□□ 0.6
SHKBP1-223ENST00000600552 CD101Q93033 1021 aa18.77■□□□□ 0.6
SHKBP1-223ENST00000600552 ATP2A3Q93084 1043 aa18.77■□□□□ 0.6
SHKBP1-223ENST00000600552 ELMO3Q96BJ8 720 aa18.77■□□□□ 0.6
SHKBP1-223ENST00000600552 PCED1BQ96HM7 432 aa18.77■□□□□ 0.6
SHKBP1-223ENST00000600552 CGRRF1Q99675 332 aa18.77■□□□□ 0.6
SHKBP1-223ENST00000600552 RTKNQ9BST9 563 aa18.77■□□□□ 0.6
SHKBP1-223ENST00000600552 ARRDC1-AS1Q9H2J1 176 aa18.77■□□□□ 0.6
SHKBP1-223ENST00000600552 DPEP3Q9H4B8 488 aa18.77■□□□□ 0.6
SHKBP1-223ENST00000600552 GCNT4Q9P109 453 aa18.77■□□□□ 0.6
SHKBP1-223ENST00000600552 F8VP50 259 aa18.76■□□□□ 0.59
SHKBP1-223ENST00000600552 EXOC3O60645 756 aa18.76■□□□□ 0.59
SHKBP1-223ENST00000600552 ZSCAN22P10073 491 aaPredicted RBP18.76■□□□□ 0.59
SHKBP1-223ENST00000600552 PTPN1P18031 435 aaKnown RBP18.76■□□□□ 0.59
SHKBP1-223ENST00000600552 DRD1P21728 446 aa18.76■□□□□ 0.59
SHKBP1-223ENST00000600552 CASP4P49662 377 aa18.76■□□□□ 0.59
SHKBP1-223ENST00000600552 SEC13P55735 322 aa18.76■□□□□ 0.59
SHKBP1-223ENST00000600552 MYL6P60660 151 aa18.76■□□□□ 0.59
SHKBP1-223ENST00000600552 NR1H3Q13133 447 aa18.76■□□□□ 0.59
SHKBP1-223ENST00000600552 BIRC3Q13489 604 aa18.76■□□□□ 0.59
SHKBP1-223ENST00000600552 CUL4BQ13620 913 aa18.76■□□□□ 0.59
SHKBP1-223ENST00000600552 PSMD6Q15008 389 aa18.76■□□□□ 0.59
SHKBP1-223ENST00000600552 VSTM1Q6UX27 236 aa18.76■□□□□ 0.59
SHKBP1-223ENST00000600552 PRR23CQ6ZRP0 262 aa18.76■□□□□ 0.59
SHKBP1-223ENST00000600552 KBTBD6Q86V97 674 aa18.76■□□□□ 0.59
SHKBP1-223ENST00000600552 HSCBQ8IWL3 235 aa18.76■□□□□ 0.59
SHKBP1-223ENST00000600552 ZNF516Q92618 1163 aa18.76■□□□□ 0.59
SHKBP1-223ENST00000600552 EXOC4Q96A65 974 aa18.76■□□□□ 0.59
SHKBP1-223ENST00000600552 SMPD4Q9NXE4 827 aa18.76■□□□□ 0.59
SHKBP1-223ENST00000600552 PCDHA7Q9UN72 937 aa18.76■□□□□ 0.59
SHKBP1-223ENST00000600552 NCOR2Q9Y618 2525 aa18.76■□□□□ 0.59
SHKBP1-223ENST00000600552 GREB1Q4ZG55 1949 aa18.75■□□□□ 0.59
SHKBP1-223ENST00000600552 A8MXQ7 604 aa18.75■□□□□ 0.59
SHKBP1-223ENST00000600552 CLDN5O00501 218 aa18.75■□□□□ 0.59
SHKBP1-223ENST00000600552 TRIM66O15016 1216 aa18.75■□□□□ 0.59
SHKBP1-223ENST00000600552 USP4Q13107 963 aa18.75■□□□□ 0.59
SHKBP1-223ENST00000600552 CSRP2Q16527 193 aa18.75■□□□□ 0.59
SHKBP1-223ENST00000600552 EML3Q32P44 896 aa18.75■□□□□ 0.59
SHKBP1-223ENST00000600552 AASDHQ4L235 1098 aaPredicted RBP18.75■□□□□ 0.59
SHKBP1-223ENST00000600552 SCARA5Q6ZMJ2 495 aa18.75■□□□□ 0.59
SHKBP1-223ENST00000600552 CACNA2D4Q7Z3S7 1137 aa18.75■□□□□ 0.59
SHKBP1-223ENST00000600552 LIMS2Q7Z4I7 341 aa18.75■□□□□ 0.59
SHKBP1-223ENST00000600552 TTC30AQ86WT1 665 aa18.75■□□□□ 0.59
SHKBP1-223ENST00000600552 CEP57L1Q8IYX8 460 aa18.75■□□□□ 0.59
SHKBP1-223ENST00000600552 GAB3Q8WWW8 586 aa18.75■□□□□ 0.59
SHKBP1-223ENST00000600552 SPATA17Q96L03 361 aa18.75■□□□□ 0.59
SHKBP1-223ENST00000600552 MED10Q9BTT4 135 aa18.75■□□□□ 0.59
SHKBP1-223ENST00000600552 INVSQ9Y283 1065 aa18.75■□□□□ 0.59
SHKBP1-223ENST00000600552 NME7Q9Y5B8 376 aa18.75■□□□□ 0.59
SHKBP1-223ENST00000600552 LEFTY2O00292 366 aa18.74■□□□□ 0.59
SHKBP1-223ENST00000600552 F13A1P00488 732 aa18.74■□□□□ 0.59
SHKBP1-223ENST00000600552 RAP1GAPP47736 663 aa18.74■□□□□ 0.59
SHKBP1-223ENST00000600552 CACNA2D1P54289 1103 aa18.74■□□□□ 0.59
SHKBP1-223ENST00000600552 SF3A2Q15428 464 aaKnown RBP18.74■□□□□ 0.59
SHKBP1-223ENST00000600552 TDRD10Q5VZ19 366 aaKnown RBP18.74■□□□□ 0.59
SHKBP1-223ENST00000600552 NETO1Q8TDF5 533 aa18.74■□□□□ 0.59
SHKBP1-223ENST00000600552 ZNF518BQ9C0D4 1074 aa18.74■□□□□ 0.59
SHKBP1-223ENST00000600552 SMOC1Q9H4F8 434 aa18.74■□□□□ 0.59
SHKBP1-223ENST00000600552 SERTAD1Q9UHV2 236 aa18.74■□□□□ 0.59
SHKBP1-223ENST00000600552 SPAG17Q6Q759 2223 aa18.73■□□□□ 0.59
SHKBP1-223ENST00000600552 LRP3O75074 770 aa18.73■□□□□ 0.59
SHKBP1-223ENST00000600552 NFATC1O95644 943 aa18.73■□□□□ 0.59
SHKBP1-223ENST00000600552 HOXA6P31267 233 aa18.73■□□□□ 0.59
SHKBP1-223ENST00000600552 PDE6CP51160 858 aa18.73■□□□□ 0.59
SHKBP1-223ENST00000600552 CDH8P55286 799 aa18.73■□□□□ 0.59
SHKBP1-223ENST00000600552 TAF10Q12962 218 aa18.73■□□□□ 0.59
SHKBP1-223ENST00000600552 C2orf27AQ580R0 203 aa18.73■□□□□ 0.59
SHKBP1-223ENST00000600552 C12orf50Q8NA57 414 aaPredicted RBP18.73■□□□□ 0.59
SHKBP1-223ENST00000600552 B3GNT5Q9BYG0 378 aa18.73■□□□□ 0.59
SHKBP1-223ENST00000600552 RNF38Q9H0F5 515 aa18.73■□□□□ 0.59
SHKBP1-223ENST00000600552 SMYD3Q9H7B4 428 aa18.73■□□□□ 0.59
SHKBP1-223ENST00000600552 MAGEF1Q9HAY2 307 aa18.73■□□□□ 0.59
SHKBP1-223ENST00000600552 ARHGAP26Q9UNA1 814 aa18.73■□□□□ 0.59
SHKBP1-223ENST00000600552 CPQQ9Y646 472 aa18.73■□□□□ 0.59
SHKBP1-223ENST00000600552 UBE4BO95155 1302 aa18.73■□□□□ 0.59
SHKBP1-223ENST00000600552 ZNF840PA6NDX5 716 aa18.72■□□□□ 0.59
SHKBP1-223ENST00000600552 DCLK1O15075 740 aa18.72■□□□□ 0.59
SHKBP1-223ENST00000600552 TACC1O75410 805 aa18.72■□□□□ 0.59
SHKBP1-223ENST00000600552 MBL2P11226 248 aaPredicted RBP18.72■□□□□ 0.59
SHKBP1-223ENST00000600552 DGKEP52429 567 aa18.72■□□□□ 0.59
SHKBP1-223ENST00000600552 ZXDBP98169 803 aa18.72■□□□□ 0.59
SHKBP1-223ENST00000600552 DNM1Q05193 864 aaKnown RBP18.72■□□□□ 0.59
SHKBP1-223ENST00000600552 DMC1Q14565 340 aa18.72■□□□□ 0.59
SHKBP1-223ENST00000600552 KNOP1Q1ED39 458 aaKnown RBP18.72■□□□□ 0.59
SHKBP1-223ENST00000600552 FBXO43Q4G163 708 aa18.72■□□□□ 0.59
SHKBP1-223ENST00000600552 RESP18Q5W5W9 173 aa18.72■□□□□ 0.59
SHKBP1-223ENST00000600552 CNNM4Q6P4Q7 775 aa18.72■□□□□ 0.59
SHKBP1-223ENST00000600552 FILIP1Q7Z7B0 1213 aa18.72■□□□□ 0.59
SHKBP1-223ENST00000600552 CCDC33Q8N5R6 958 aa18.72■□□□□ 0.59
SHKBP1-223ENST00000600552 EZH1Q92800 747 aaPredicted RBP18.72■□□□□ 0.59
SHKBP1-223ENST00000600552 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.72■□□□□ 0.59
SHKBP1-223ENST00000600552 EHD2Q9NZN4 543 aa18.72■□□□□ 0.59
SHKBP1-223ENST00000600552 CFAP97Q9P2B7 532 aa18.72■□□□□ 0.59
SHKBP1-223ENST00000600552 PTPRDP23468 1912 aa18.72■□□□□ 0.59
SHKBP1-223ENST00000600552 ANTXRLA6NF34 631 aa18.71■□□□□ 0.59
SHKBP1-223ENST00000600552 SLC30A4O14863 429 aa18.71■□□□□ 0.59
SHKBP1-223ENST00000600552 SNRPFP62306 86 aaKnown RBP18.71■□□□□ 0.59
SHKBP1-223ENST00000600552 ORC1Q13415 861 aa18.71■□□□□ 0.59
SHKBP1-223ENST00000600552 PKP1Q13835 747 aa18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms