RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 TAF12Q16514 161 aa17.2■□□□□ 0.34
LSM4-206ENST00000600289 DPCR1Q3MIW9 517 aa17.2■□□□□ 0.34
LSM4-206ENST00000600289 ARHGAP15Q53QZ3 475 aa17.2■□□□□ 0.34
LSM4-206ENST00000600289 WDR44Q5JSH3 913 aa17.2■□□□□ 0.34
LSM4-206ENST00000600289 FAM78AQ5JUQ0 283 aa17.2■□□□□ 0.34
LSM4-206ENST00000600289 TMEM150AQ86TG1 271 aa17.2■□□□□ 0.34
LSM4-206ENST00000600289 E2F7Q96AV8 911 aa17.2■□□□□ 0.34
LSM4-206ENST00000600289 ZSWIM3Q96MP5 696 aa17.2■□□□□ 0.34
LSM4-206ENST00000600289 TTLL2Q9BWV7 592 aa17.2■□□□□ 0.34
LSM4-206ENST00000600289 DNAI2Q9GZS0 605 aa17.2■□□□□ 0.34
LSM4-206ENST00000600289 WNT16Q9UBV4 365 aa17.2■□□□□ 0.34
LSM4-206ENST00000600289 HMGXB4Q9UGU5 601 aa17.2■□□□□ 0.34
LSM4-206ENST00000600289 NARSO43776 548 aaKnown RBP17.19■□□□□ 0.34
LSM4-206ENST00000600289 LMNAP02545 664 aaKnown RBP17.19■□□□□ 0.34
LSM4-206ENST00000600289 ANXA13P27216 316 aa17.19■□□□□ 0.34
LSM4-206ENST00000600289 CDR1P51861 262 aa17.19■□□□□ 0.34
LSM4-206ENST00000600289 ST3GAL2Q16842 350 aa17.19■□□□□ 0.34
LSM4-206ENST00000600289 PAQR9Q6ZVX9 377 aa17.19■□□□□ 0.34
LSM4-206ENST00000600289 ACOT1Q86TX2 421 aa17.19■□□□□ 0.34
LSM4-206ENST00000600289 FAM35AQ86V20 835 aa17.19■□□□□ 0.34
LSM4-206ENST00000600289 SCN4BQ8IWT1 228 aa17.19■□□□□ 0.34
LSM4-206ENST00000600289 CCDC105Q8IYK2 499 aa17.19■□□□□ 0.34
LSM4-206ENST00000600289 FUKQ8N0W3 1084 aa17.19■□□□□ 0.34
LSM4-206ENST00000600289 ZSCAN18Q8TBC5 510 aaPredicted RBP17.19■□□□□ 0.34
LSM4-206ENST00000600289 GPR152Q8TDT2 470 aa17.19■□□□□ 0.34
LSM4-206ENST00000600289 WHAMMQ8TF30 809 aa17.19■□□□□ 0.34
LSM4-206ENST00000600289 RPP25Q9BUL9 199 aaKnown RBP17.19■□□□□ 0.34
LSM4-206ENST00000600289 NT5C1AQ9BXI3 368 aa17.19■□□□□ 0.34
LSM4-206ENST00000600289 ZNF518BQ9C0D4 1074 aa17.19■□□□□ 0.34
LSM4-206ENST00000600289 ATXN3LQ9H3M9 355 aa17.19■□□□□ 0.34
LSM4-206ENST00000600289 TASP1Q9H6P5 420 aa17.19■□□□□ 0.34
LSM4-206ENST00000600289 ZFP14Q9HCL3 533 aa17.19■□□□□ 0.34
LSM4-206ENST00000600289 MIA3Q5JRA6 1907 aa17.18■□□□□ 0.34
LSM4-206ENST00000600289 PI15O43692 258 aa17.18■□□□□ 0.34
LSM4-206ENST00000600289 GRIK1P39086 918 aa17.18■□□□□ 0.34
LSM4-206ENST00000600289 CETN1Q12798 172 aa17.18■□□□□ 0.34
LSM4-206ENST00000600289 SDHAF4Q5VUM1 108 aa17.18■□□□□ 0.34
LSM4-206ENST00000600289 TANGO2Q6ICL3 276 aa17.18■□□□□ 0.34
LSM4-206ENST00000600289 DENND5BQ6ZUT9 1274 aa17.18■□□□□ 0.34
LSM4-206ENST00000600289 DEPDC1BQ8WUY9 529 aa17.18■□□□□ 0.34
LSM4-206ENST00000600289 SMARCD1Q96GM5 515 aa17.18■□□□□ 0.34
LSM4-206ENST00000600289 TWNKQ96RR1 684 aa17.18■□□□□ 0.34
LSM4-206ENST00000600289 KXD1Q9BQD3 176 aa17.18■□□□□ 0.34
LSM4-206ENST00000600289 CSNK1G1Q9HCP0 422 aa17.18■□□□□ 0.34
LSM4-206ENST00000600289 TMEM30AQ9NV96 361 aa17.18■□□□□ 0.34
LSM4-206ENST00000600289 OBP2AQ9NY56 170 aa17.18■□□□□ 0.34
LSM4-206ENST00000600289 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.18■□□□□ 0.34
LSM4-206ENST00000600289 F8VP50 259 aa17.17■□□□□ 0.34
LSM4-206ENST00000600289 TADA3O75528 432 aa17.17■□□□□ 0.34
LSM4-206ENST00000600289 AFPP02771 609 aaKnown RBP17.17■□□□□ 0.34
LSM4-206ENST00000600289 TBXAS1P24557 533 aaPredicted RBP17.17■□□□□ 0.34
LSM4-206ENST00000600289 CACNA2D1P54289 1103 aa17.17■□□□□ 0.34
LSM4-206ENST00000600289 KCNH2Q12809 1159 aa17.17■□□□□ 0.34
LSM4-206ENST00000600289 CUL2Q13617 745 aa17.17■□□□□ 0.34
LSM4-206ENST00000600289 STXBP5Q5T5C0 1151 aa17.17■□□□□ 0.34
LSM4-206ENST00000600289 GPR158Q5T848 1215 aa17.17■□□□□ 0.34
LSM4-206ENST00000600289 IRF2BP1Q8IU81 584 aa17.17■□□□□ 0.34
LSM4-206ENST00000600289 UBR7Q8N806 425 aa17.17■□□□□ 0.34
LSM4-206ENST00000600289 LMO3Q8TAP4 145 aa17.17■□□□□ 0.34
LSM4-206ENST00000600289 TATDN2Q93075 761 aa17.17■□□□□ 0.34
LSM4-206ENST00000600289 CNOT6LQ96LI5 555 aaKnown RBP17.17■□□□□ 0.34
LSM4-206ENST00000600289 HNRNPABQ99729 332 aaKnown RBP17.17■□□□□ 0.34
LSM4-206ENST00000600289 THAP9Q9H5L6 903 aa17.17■□□□□ 0.34
LSM4-206ENST00000600289 DMAP1Q9NPF5 467 aaPredicted RBP17.17■□□□□ 0.34
LSM4-206ENST00000600289 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.17■□□□□ 0.341e-9■■■■■ 59.3
LSM4-206ENST00000600289 CISHQ9NSE2 258 aa17.17■□□□□ 0.34
LSM4-206ENST00000600289 COMMD8Q9NX08 183 aa17.17■□□□□ 0.34
LSM4-206ENST00000600289 CLDN5O00501 218 aa17.16■□□□□ 0.34
LSM4-206ENST00000600289 PFKLP17858 780 aa17.16■□□□□ 0.34
LSM4-206ENST00000600289 CD58P19256 250 aa17.16■□□□□ 0.34
LSM4-206ENST00000600289 AOC1P19801 751 aa17.16■□□□□ 0.34
LSM4-206ENST00000600289 PPP3CCP48454 512 aa17.16■□□□□ 0.34
LSM4-206ENST00000600289 YWHAEP62258 255 aaKnown RBP17.16■□□□□ 0.34
LSM4-206ENST00000600289 CYP4F8P98187 520 aa17.16■□□□□ 0.34
LSM4-206ENST00000600289 PFKPQ01813 784 aa17.16■□□□□ 0.34
LSM4-206ENST00000600289 VITQ6UXI7 678 aa17.16■□□□□ 0.34
LSM4-206ENST00000600289 MON1AQ86VX9 555 aa17.16■□□□□ 0.34
LSM4-206ENST00000600289 MFSD6LQ8IWD5 586 aa17.16■□□□□ 0.34
LSM4-206ENST00000600289 STKLD1Q8NE28 680 aa17.16■□□□□ 0.34
LSM4-206ENST00000600289 SLC2A14Q8TDB8 520 aa17.16■□□□□ 0.34
LSM4-206ENST00000600289 MRPS31Q92665 395 aaKnown RBP17.16■□□□□ 0.34
LSM4-206ENST00000600289 DNASE1L2Q92874 299 aa17.16■□□□□ 0.34
LSM4-206ENST00000600289 ARID3AQ99856 593 aa17.16■□□□□ 0.34
LSM4-206ENST00000600289 PLA2G2FQ9BZM2 168 aa17.16■□□□□ 0.34
LSM4-206ENST00000600289 SEMA4AQ9H3S1 761 aa17.16■□□□□ 0.34
LSM4-206ENST00000600289 MFSD1Q9H3U5 465 aa17.16■□□□□ 0.34
LSM4-206ENST00000600289 SLITRK6Q9H5Y7 841 aa17.16■□□□□ 0.34
LSM4-206ENST00000600289 TRPV5Q9NQA5 729 aa17.16■□□□□ 0.34
LSM4-206ENST00000600289 IL37Q9NZH6 218 aa17.16■□□□□ 0.34
LSM4-206ENST00000600289 MAGED2Q9UNF1 606 aaPredicted RBP17.16■□□□□ 0.34
LSM4-206ENST00000600289 NCANO14594 1321 aa17.16■□□□□ 0.34
LSM4-206ENST00000600289 TNFRSF10BO14763 440 aa17.15■□□□□ 0.34
LSM4-206ENST00000600289 RTN3O95197 1032 aaPredicted RBP17.15■□□□□ 0.34
LSM4-206ENST00000600289 CCDC130P13994 396 aa17.15■□□□□ 0.34
LSM4-206ENST00000600289 PRKCSHP14314 528 aaPredicted RBP17.15■□□□□ 0.34
LSM4-206ENST00000600289 NPR3P17342 541 aa17.15■□□□□ 0.34
LSM4-206ENST00000600289 PSMC3P17980 439 aa17.15■□□□□ 0.34
LSM4-206ENST00000600289 FCHO2Q0JRZ9 810 aa17.15■□□□□ 0.34
LSM4-206ENST00000600289 ORC1Q13415 861 aa17.15■□□□□ 0.34
LSM4-206ENST00000600289 ZNF268Q14587 947 aaPredicted RBP17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms