RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 CETN1Q12798 172 aa20.69■□□□□ 0.9
SHKBP1-221ENST00000599833 IQCB1Q15051 598 aa20.69■□□□□ 0.9
SHKBP1-221ENST00000599833 GBP6Q6ZN66 633 aa20.69■□□□□ 0.9
SHKBP1-221ENST00000599833 CREBRFQ8IUR6 639 aa20.69■□□□□ 0.9
SHKBP1-221ENST00000599833 AOPEPQ8N6M6 819 aa20.69■□□□□ 0.9
SHKBP1-221ENST00000599833 CYFIP2Q96F07 1278 aa20.69■□□□□ 0.9
SHKBP1-221ENST00000599833 PLA2G2FQ9BZM2 168 aa20.69■□□□□ 0.9
SHKBP1-221ENST00000599833 TAB2Q9NYJ8 693 aa20.69■□□□□ 0.9
SHKBP1-221ENST00000599833 IGSF9Q9P2J2 1179 aa20.69■□□□□ 0.9
SHKBP1-221ENST00000599833 LIMA1Q9UHB6 759 aaKnown RBP20.69■□□□□ 0.9
SHKBP1-221ENST00000599833 MYO16Q9Y6X6 1858 aa20.69■□□□□ 0.9
SHKBP1-221ENST00000599833 LRRC10BA6NIK2 292 aa20.68■□□□□ 0.9
SHKBP1-221ENST00000599833 BECN2A8MW95 431 aa20.68■□□□□ 0.9
SHKBP1-221ENST00000599833 NARSO43776 548 aaKnown RBP20.68■□□□□ 0.9
SHKBP1-221ENST00000599833 CALCAP01258 141 aa20.68■□□□□ 0.9
SHKBP1-221ENST00000599833 PRKCSHP14314 528 aaPredicted RBP20.68■□□□□ 0.9
SHKBP1-221ENST00000599833 ADORA2BP29275 332 aa20.68■□□□□ 0.9
SHKBP1-221ENST00000599833 ZXDAP98168 799 aa20.68■□□□□ 0.9
SHKBP1-221ENST00000599833 EXOC3L4Q17RC7 722 aa20.68■□□□□ 0.9
SHKBP1-221ENST00000599833 ZSCAN23Q3MJ62 389 aa20.68■□□□□ 0.9
SHKBP1-221ENST00000599833 TANGO2Q6ICL3 276 aa20.68■□□□□ 0.9
SHKBP1-221ENST00000599833 DENND5BQ6ZUT9 1274 aa20.68■□□□□ 0.9
SHKBP1-221ENST00000599833 GPRIN1Q7Z2K8 1008 aa20.68■□□□□ 0.9
SHKBP1-221ENST00000599833 TTC30AQ86WT1 665 aa20.68■□□□□ 0.9
SHKBP1-221ENST00000599833 SLC44A3Q8N4M1 653 aa20.68■□□□□ 0.9
SHKBP1-221ENST00000599833 TFAP2BQ92481 460 aa20.68■□□□□ 0.9
SHKBP1-221ENST00000599833 NXPE3Q969Y0 559 aa20.68■□□□□ 0.9
SHKBP1-221ENST00000599833 SLC46A2Q9BY10 475 aa20.68■□□□□ 0.9
SHKBP1-221ENST00000599833 SORCS3Q9UPU3 1222 aa20.68■□□□□ 0.9
SHKBP1-221ENST00000599833 HELZP42694 1942 aaKnown RBP20.68■□□□□ 0.9
SHKBP1-221ENST00000599833 FGF19O95750 216 aa20.67■□□□□ 0.9
SHKBP1-221ENST00000599833 ATP1A3P13637 1013 aa20.67■□□□□ 0.9
SHKBP1-221ENST00000599833 WEE1P30291 646 aa20.67■□□□□ 0.9
SHKBP1-221ENST00000599833 CDC25CP30307 473 aa20.67■□□□□ 0.9
SHKBP1-221ENST00000599833 NFKBIBQ15653 356 aa20.67■□□□□ 0.9
SHKBP1-221ENST00000599833 PKDCCQ504Y2 493 aa20.67■□□□□ 0.9
SHKBP1-221ENST00000599833 SCAMP5Q8TAC9 235 aa20.67■□□□□ 0.9
SHKBP1-221ENST00000599833 EDAQ92838 391 aa20.67■□□□□ 0.9
SHKBP1-221ENST00000599833 JAKMIP2Q96AA8 810 aa20.67■□□□□ 0.9
SHKBP1-221ENST00000599833 LRRC3BQ96PB8 259 aa20.67■□□□□ 0.9
SHKBP1-221ENST00000599833 MED10Q9BTT4 135 aa20.67■□□□□ 0.9
SHKBP1-221ENST00000599833 GPR88Q9GZN0 384 aa20.67■□□□□ 0.9
SHKBP1-221ENST00000599833 ATXN3LQ9H3M9 355 aa20.67■□□□□ 0.9
SHKBP1-221ENST00000599833 DMAP1Q9NPF5 467 aaPredicted RBP20.67■□□□□ 0.9
SHKBP1-221ENST00000599833 APEX2Q9UBZ4 518 aa20.67■□□□□ 0.9
SHKBP1-221ENST00000599833 MAGED2Q9UNF1 606 aaPredicted RBP20.67■□□□□ 0.9
SHKBP1-221ENST00000599833 O00370 1275 aa20.66■□□□□ 0.9
SHKBP1-221ENST00000599833 LETM1O95202 739 aaPredicted RBP20.66■□□□□ 0.9
SHKBP1-221ENST00000599833 PRAMEF12O95522 483 aa20.66■□□□□ 0.9
SHKBP1-221ENST00000599833 PGFP49763 221 aa20.66■□□□□ 0.9
SHKBP1-221ENST00000599833 SLC5A3P53794 718 aa20.66■□□□□ 0.9
SHKBP1-221ENST00000599833 MAP3K7CLP57077 242 aa20.66■□□□□ 0.9
SHKBP1-221ENST00000599833 TMEM270Q6UE05 265 aa20.66■□□□□ 0.9
SHKBP1-221ENST00000599833 NUP93Q8N1F7 819 aa20.66■□□□□ 0.9
SHKBP1-221ENST00000599833 RIN3Q8TB24 985 aa20.66■□□□□ 0.9
SHKBP1-221ENST00000599833 ZSCAN18Q8TBC5 510 aaPredicted RBP20.66■□□□□ 0.9
SHKBP1-221ENST00000599833 ASIC4Q96FT7 647 aa20.66■□□□□ 0.9
SHKBP1-221ENST00000599833 HEXIM2Q96MH2 286 aaKnown RBP20.66■□□□□ 0.9
SHKBP1-221ENST00000599833 SLC22A12Q96S37 553 aa20.66■□□□□ 0.9
SHKBP1-221ENST00000599833 KXD1Q9BQD3 176 aa20.66■□□□□ 0.9
SHKBP1-221ENST00000599833 NAA15Q9BXJ9 866 aaKnown RBP20.66■□□□□ 0.9
SHKBP1-221ENST00000599833 DUSP16Q9BY84 665 aa20.66■□□□□ 0.9
SHKBP1-221ENST00000599833 UBE2TQ9NPD8 197 aaPredicted RBP20.66■□□□□ 0.9
SHKBP1-221ENST00000599833 DUSP12Q9UNI6 340 aa20.66■□□□□ 0.9
SHKBP1-221ENST00000599833 ATP8B3O60423 1300 aa20.66■□□□□ 0.9
SHKBP1-221ENST00000599833 COL4A3Q01955 1670 aa20.66■□□□□ 0.9
SHKBP1-221ENST00000599833 ECI2O75521 394 aa20.65■□□□□ 0.9
SHKBP1-221ENST00000599833 PAEPP09466 180 aa20.65■□□□□ 0.9
SHKBP1-221ENST00000599833 FAM200BP0CF97 657 aa20.65■□□□□ 0.9
SHKBP1-221ENST00000599833 NPR3P17342 541 aa20.65■□□□□ 0.9
SHKBP1-221ENST00000599833 ANXA13P27216 316 aa20.65■□□□□ 0.9
SHKBP1-221ENST00000599833 VIPR2P41587 438 aa20.65■□□□□ 0.9
SHKBP1-221ENST00000599833 COPB1P53618 953 aaKnown RBP20.65■□□□□ 0.9
SHKBP1-221ENST00000599833 YWHAEP62258 255 aaKnown RBP20.65■□□□□ 0.9
SHKBP1-221ENST00000599833 TDGQ13569 410 aa20.65■□□□□ 0.9
SHKBP1-221ENST00000599833 SKOR2Q2VWA4 1001 aaPredicted RBP20.65■□□□□ 0.9
SHKBP1-221ENST00000599833 GPR158Q5T848 1215 aa20.65■□□□□ 0.9
SHKBP1-221ENST00000599833 TXNDC8Q6A555 127 aa20.65■□□□□ 0.9
SHKBP1-221ENST00000599833 MTSS1LQ765P7 747 aa20.65■□□□□ 0.9
SHKBP1-221ENST00000599833 RBBP8NLQ8NC74 664 aaPredicted RBP20.65■□□□□ 0.9
SHKBP1-221ENST00000599833 SHC3Q92529 594 aa20.65■□□□□ 0.9
SHKBP1-221ENST00000599833 SMARCD2Q92925 531 aa20.65■□□□□ 0.9
SHKBP1-221ENST00000599833 ELSPBP1Q96BH3 223 aa20.65■□□□□ 0.9
SHKBP1-221ENST00000599833 VPS16Q9H269 839 aa20.65■□□□□ 0.9
SHKBP1-221ENST00000599833 TASP1Q9H6P5 420 aa20.65■□□□□ 0.9
SHKBP1-221ENST00000599833 UXTQ9UBK9 157 aaPredicted RBP20.65■□□□□ 0.9
SHKBP1-221ENST00000599833 PCDHB4Q9Y5E5 795 aa20.65■□□□□ 0.9
SHKBP1-221ENST00000599833 ZDHHC11BP0C7U3 371 aa20.64■□□□□ 0.89
SHKBP1-221ENST00000599833 ALADP13716 330 aa20.64■□□□□ 0.89
SHKBP1-221ENST00000599833 KLK7P49862 253 aa20.64■□□□□ 0.89
SHKBP1-221ENST00000599833 ZNF165P49910 485 aa20.64■□□□□ 0.89
SHKBP1-221ENST00000599833 VITQ6UXI7 678 aa20.64■□□□□ 0.89
SHKBP1-221ENST00000599833 MON1AQ86VX9 555 aa20.64■□□□□ 0.89
SHKBP1-221ENST00000599833 ANKRD52Q8NB46 1076 aa20.64■□□□□ 0.89
SHKBP1-221ENST00000599833 GANQ9H2C0 597 aa20.64■□□□□ 0.89
SHKBP1-221ENST00000599833 PNPLA8Q9NP80 782 aa20.64■□□□□ 0.89
SHKBP1-221ENST00000599833 ACP6Q9NPH0 428 aa20.64■□□□□ 0.89
SHKBP1-221ENST00000599833 TSPAN16Q9UKR8 245 aa20.64■□□□□ 0.89
SHKBP1-221ENST00000599833 SIK3Q9Y2K2 1263 aa20.64■□□□□ 0.89
SHKBP1-221ENST00000599833 ZNF840PA6NDX5 716 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms