RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 SMARCD1Q96GM5 515 aa15.03■□□□□ -0
LIG1-218ENST00000599322 NT5C1AQ9BXI3 368 aa15.03■□□□□ -0
LIG1-218ENST00000599322 SLC46A2Q9BY10 475 aa15.03■□□□□ -0
LIG1-218ENST00000599322 DMAP1Q9NPF5 467 aaPredicted RBP15.03■□□□□ -0
LIG1-218ENST00000599322 HEBP1Q9NRV9 189 aa15.03■□□□□ -0
LIG1-218ENST00000599322 TDP1Q9NUW8 608 aa15.03■□□□□ -0
LIG1-218ENST00000599322 RAB20Q9NX57 234 aa15.03■□□□□ -0
LIG1-218ENST00000599322 FAM186AA6NE01 2351 aa15.02■□□□□ -0
LIG1-218ENST00000599322 HDCP19113 662 aa15.02■□□□□ -0
LIG1-218ENST00000599322 MLLT6P55198 1093 aaPredicted RBP15.02■□□□□ -0
LIG1-218ENST00000599322 SLC8A3P57103 927 aa15.02■□□□□ -0
LIG1-218ENST00000599322 FCHO2Q0JRZ9 810 aa15.02■□□□□ -0
LIG1-218ENST00000599322 TXNDC8Q6A555 127 aa15.02■□□□□ -0
LIG1-218ENST00000599322 FRMD5Q7Z6J6 570 aa15.02■□□□□ -0
LIG1-218ENST00000599322 GPIHBP1Q8IV16 184 aa15.02■□□□□ -0
LIG1-218ENST00000599322 NUP93Q8N1F7 819 aa15.02■□□□□ -0
LIG1-218ENST00000599322 TTC16Q8NEE8 873 aa15.02■□□□□ -0
LIG1-218ENST00000599322 NELFBQ8WX92 580 aa15.02■□□□□ -0
LIG1-218ENST00000599322 FAM3CQ92520 227 aa15.02■□□□□ -0
LIG1-218ENST00000599322 B3GNT5Q9BYG0 378 aa15.02■□□□□ -0
LIG1-218ENST00000599322 DPEP3Q9H4B8 488 aa15.02■□□□□ -0
LIG1-218ENST00000599322 FAM124BQ9H5Z6 455 aaPredicted RBP15.02■□□□□ -0
LIG1-218ENST00000599322 LTB4R2Q9NPC1 389 aa15.02■□□□□ -0
LIG1-218ENST00000599322 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.02■□□□□ -0
LIG1-218ENST00000599322 COMMD8Q9NX08 183 aa15.02■□□□□ -0
LIG1-218ENST00000599322 PIAS3Q9Y6X2 628 aa15.02■□□□□ -0
LIG1-218ENST00000599322 PRR23AA6NEV1 266 aa15.01□□□□□ -0.01
LIG1-218ENST00000599322 GOLGA6L22H0YM25 854 aa15.01□□□□□ -0.01
LIG1-218ENST00000599322 AP1G2O75843 785 aa15.01□□□□□ -0.01
LIG1-218ENST00000599322 DCNP07585 359 aaKnown RBP15.01□□□□□ -0.01
LIG1-218ENST00000599322 CD58P19256 250 aa15.01□□□□□ -0.01
LIG1-218ENST00000599322 YWHAQP27348 245 aa15.01□□□□□ -0.01
LIG1-218ENST00000599322 IFRD2Q12894 506 aaPredicted RBP15.01□□□□□ -0.01
LIG1-218ENST00000599322 PAK1Q13153 545 aa15.01□□□□□ -0.01
LIG1-218ENST00000599322 ZNF268Q14587 947 aaPredicted RBP15.01□□□□□ -0.01
LIG1-218ENST00000599322 PPP2R5DQ14738 602 aa15.01□□□□□ -0.01
LIG1-218ENST00000599322 CCDC142Q17RM4 750 aa15.01□□□□□ -0.01
LIG1-218ENST00000599322 C1orf220Q5T0J3 134 aa15.01□□□□□ -0.01
LIG1-218ENST00000599322 SPOPLQ6IQ16 392 aa15.01□□□□□ -0.01
LIG1-218ENST00000599322 FOXR2Q6PJQ5 311 aa15.01□□□□□ -0.01
LIG1-218ENST00000599322 FAM35AQ86V20 835 aa15.01□□□□□ -0.01
LIG1-218ENST00000599322 CRYBG2Q8N1P7 616 aa15.01□□□□□ -0.01
LIG1-218ENST00000599322 GBP4Q96PP9 640 aa15.01□□□□□ -0.01
LIG1-218ENST00000599322 FOXQ1Q9C009 403 aa15.01□□□□□ -0.01
LIG1-218ENST00000599322 ZNF518BQ9C0D4 1074 aa15.01□□□□□ -0.01
LIG1-218ENST00000599322 PTPRZ1P23471 2315 aaPredicted RBP15□□□□□ -0.01
LIG1-218ENST00000599322 SPTBN4Q9H254 2564 aa15□□□□□ -0.01
LIG1-218ENST00000599322 RIF1Q5UIP0 2472 aaKnown RBP15□□□□□ -0.01
LIG1-218ENST00000599322 TRIM49BA6NDI0 452 aa15□□□□□ -0.01
LIG1-218ENST00000599322 CLDN5O00501 218 aa15□□□□□ -0.01
LIG1-218ENST00000599322 LAMTOR5O43504 91 aa15□□□□□ -0.01
LIG1-218ENST00000599322 FAM200BP0CF97 657 aa15□□□□□ -0.01
LIG1-218ENST00000599322 CCDC192P0DO97 292 aa15□□□□□ -0.01
LIG1-218ENST00000599322 ASPAP45381 313 aa15□□□□□ -0.01
LIG1-218ENST00000599322 NR1H3Q13133 447 aa15□□□□□ -0.01
LIG1-218ENST00000599322 MORC3Q14149 939 aa15□□□□□ -0.01
LIG1-218ENST00000599322 LRRC32Q14392 662 aa15□□□□□ -0.01
LIG1-218ENST00000599322 PDGFRLQ15198 375 aa15□□□□□ -0.01
LIG1-218ENST00000599322 CAMK4Q16566 473 aa15□□□□□ -0.01
LIG1-218ENST00000599322 TPD52L1Q16890 204 aaPredicted RBP15□□□□□ -0.01
LIG1-218ENST00000599322 POTEHQ6S545 545 aa15□□□□□ -0.01
LIG1-218ENST00000599322 FBXO32Q969P5 355 aa15□□□□□ -0.01
LIG1-218ENST00000599322 DDX23Q9BUQ8 820 aaKnown RBP15□□□□□ -0.01
LIG1-218ENST00000599322 TTLL2Q9BWV7 592 aa15□□□□□ -0.01
LIG1-218ENST00000599322 NACA2Q9H009 215 aa15□□□□□ -0.01
LIG1-218ENST00000599322 SDCBP2Q9H190 292 aa15□□□□□ -0.01
LIG1-218ENST00000599322 FBXO44Q9H4M3 255 aa15□□□□□ -0.01
LIG1-218ENST00000599322 GKN1Q9NS71 199 aa15□□□□□ -0.01
LIG1-218ENST00000599322 SPATA6Q9NWH7 488 aaPredicted RBP15□□□□□ -0.01
LIG1-218ENST00000599322 KIAA1468Q9P260 1216 aa15□□□□□ -0.01
LIG1-218ENST00000599322 NDRG2Q9UN36 371 aaKnown RBP15□□□□□ -0.01
LIG1-218ENST00000599322 CTNND2Q9UQB3 1225 aa15□□□□□ -0.01
LIG1-218ENST00000599322 COL4A3Q01955 1670 aa15□□□□□ -0.01
LIG1-218ENST00000599322 PATJQ8NI35 1801 aa14.99□□□□□ -0.01
LIG1-218ENST00000599322 PRAMEF12O95522 483 aa14.99□□□□□ -0.01
LIG1-218ENST00000599322 CD72P21854 359 aa14.99□□□□□ -0.01
LIG1-218ENST00000599322 TBXAS1P24557 533 aaPredicted RBP14.99□□□□□ -0.01
LIG1-218ENST00000599322 IFNAR2P48551 515 aa14.99□□□□□ -0.01
LIG1-218ENST00000599322 INCA1Q0VD86 236 aa14.99□□□□□ -0.01
LIG1-218ENST00000599322 TAF10Q12962 218 aa14.99□□□□□ -0.01
LIG1-218ENST00000599322 ANGPT1Q15389 498 aa14.99□□□□□ -0.01
LIG1-218ENST00000599322 ITPRIPL2Q3MIP1 535 aa14.99□□□□□ -0.01
LIG1-218ENST00000599322 TMEM150AQ86TG1 271 aa14.99□□□□□ -0.01
LIG1-218ENST00000599322 RALGPS2Q86X27 583 aaPredicted RBP14.99□□□□□ -0.01
LIG1-218ENST00000599322 CREBRFQ8IUR6 639 aa14.99□□□□□ -0.01
LIG1-218ENST00000599322 ZC3H3Q8IXZ2 948 aaKnown RBP14.99□□□□□ -0.01
LIG1-218ENST00000599322 SLC2A14Q8TDB8 520 aa14.99□□□□□ -0.01
LIG1-218ENST00000599322 OVCA2Q8WZ82 227 aa14.99□□□□□ -0.01
LIG1-218ENST00000599322 USP13Q92995 863 aaPredicted RBP14.99□□□□□ -0.01
LIG1-218ENST00000599322 ELMO3Q96BJ8 720 aa14.99□□□□□ -0.01
LIG1-218ENST00000599322 CYFIP2Q96F07 1278 aa14.99□□□□□ -0.01
LIG1-218ENST00000599322 HEXIM2Q96MH2 286 aaKnown RBP14.99□□□□□ -0.01
LIG1-218ENST00000599322 SMG9Q9H0W8 520 aaKnown RBP14.99□□□□□ -0.01
LIG1-218ENST00000599322 KRT82Q9NSB4 513 aa14.99□□□□□ -0.01
LIG1-218ENST00000599322 FAM49BQ9NUQ9 324 aa14.99□□□□□ -0.01
LIG1-218ENST00000599322 DACH1Q9UI36 760 aa14.99□□□□□ -0.01
LIG1-218ENST00000599322 DCHS1Q96JQ0 3298 aa14.99□□□□□ -0.01
LIG1-218ENST00000599322 PPP1R3GB7ZBB8 358 aa14.98□□□□□ -0.01
LIG1-218ENST00000599322 NRG2O14511 850 aaPredicted RBP14.98□□□□□ -0.01
LIG1-218ENST00000599322 CCDC130P13994 396 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms