RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 DYMQ7RTS9 669 aa17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 SCN4BQ8IWT1 228 aa17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 TMEM86AQ8N2M4 240 aa17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 CCDC33Q8N5R6 958 aa17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 CSGALNACT2Q8N6G5 542 aa17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 LARP4BQ92615 738 aaKnown RBP17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 SAAL1Q96ER3 474 aa17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 TMEM9BQ9NQ34 198 aa17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 GDAP2Q9NXN4 497 aa17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 SIX4Q9UIU6 781 aa17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 ARHGAP26Q9UNA1 814 aa17.63■□□□□ 0.41
SHKBP1-215ENST00000597649 TCHHQ07283 1943 aa17.62■□□□□ 0.41
SHKBP1-215ENST00000597649 SPTLC2O15270 562 aa17.62■□□□□ 0.41
SHKBP1-215ENST00000597649 TCF3P15923 654 aa17.62■□□□□ 0.41
SHKBP1-215ENST00000597649 LONP1P36776 959 aaKnown RBP17.62■□□□□ 0.41
SHKBP1-215ENST00000597649 MYL7Q01449 175 aa17.62■□□□□ 0.41
SHKBP1-215ENST00000597649 NR1H3Q13133 447 aa17.62■□□□□ 0.41
SHKBP1-215ENST00000597649 SOWAHAQ2M3V2 549 aa17.62■□□□□ 0.41
SHKBP1-215ENST00000597649 TMEM92Q6UXU6 159 aa17.62■□□□□ 0.41
SHKBP1-215ENST00000597649 BRSK2Q8IWQ3 736 aa17.62■□□□□ 0.41
SHKBP1-215ENST00000597649 FRMD1Q8N878 549 aa17.62■□□□□ 0.41
SHKBP1-215ENST00000597649 MDGA1Q8NFP4 955 aa17.62■□□□□ 0.41
SHKBP1-215ENST00000597649 OLIG1Q8TAK6 271 aa17.62■□□□□ 0.41
SHKBP1-215ENST00000597649 TBC1D7Q9P0N9 293 aa17.62■□□□□ 0.41
SHKBP1-215ENST00000597649 SNX9Q9Y5X1 595 aa17.62■□□□□ 0.41
SHKBP1-215ENST00000597649 NUP205Q92621 2012 aa17.62■□□□□ 0.41
SHKBP1-215ENST00000597649 PCNX2A6NKB5 2137 aa17.62■□□□□ 0.41
SHKBP1-215ENST00000597649 MYO16Q9Y6X6 1858 aa17.61■□□□□ 0.41
SHKBP1-215ENST00000597649 THADAQ6YHU6 1953 aa17.61■□□□□ 0.41
SHKBP1-215ENST00000597649 GOLGA8IPA6NC78 632 aa17.61■□□□□ 0.41
SHKBP1-215ENST00000597649 GOLGA8JA6NMD2 632 aa17.61■□□□□ 0.41
SHKBP1-215ENST00000597649 LEFTY2O00292 366 aa17.61■□□□□ 0.41
SHKBP1-215ENST00000597649 CEACAM1P13688 526 aa17.61■□□□□ 0.41
SHKBP1-215ENST00000597649 CSRP1P21291 193 aaKnown RBP17.61■□□□□ 0.41
SHKBP1-215ENST00000597649 LMO2P25791 158 aa17.61■□□□□ 0.41
SHKBP1-215ENST00000597649 SLC6A11P48066 632 aa17.61■□□□□ 0.41
SHKBP1-215ENST00000597649 USP46P62068 366 aa17.61■□□□□ 0.41
SHKBP1-215ENST00000597649 CYP2U1Q7Z449 544 aa17.61■□□□□ 0.41
SHKBP1-215ENST00000597649 LIMS2Q7Z4I7 341 aa17.61■□□□□ 0.41
SHKBP1-215ENST00000597649 SPATA2LQ8IUW3 424 aaPredicted RBP17.61■□□□□ 0.41
SHKBP1-215ENST00000597649 ADGRF2Q8IZF7 708 aa17.61■□□□□ 0.41
SHKBP1-215ENST00000597649 ADGRG2Q8IZP9 1017 aa17.61■□□□□ 0.41
SHKBP1-215ENST00000597649 LRRC52Q8N7C0 313 aa17.61■□□□□ 0.41
SHKBP1-215ENST00000597649 KRI1Q8N9T8 703 aaKnown RBP17.61■□□□□ 0.41
SHKBP1-215ENST00000597649 LINC00301Q8NCQ3 95 aa17.61■□□□□ 0.41
SHKBP1-215ENST00000597649 RLN3Q8WXF3 142 aa17.61■□□□□ 0.41
SHKBP1-215ENST00000597649 EPSTI1Q96J88 318 aa17.61■□□□□ 0.41
SHKBP1-215ENST00000597649 CNOT6LQ96LI5 555 aaKnown RBP17.61■□□□□ 0.41
SHKBP1-215ENST00000597649 SPATA32Q96LK8 384 aa17.61■□□□□ 0.41
SHKBP1-215ENST00000597649 SCAND2PQ9GZW5 306 aaPredicted RBP17.61■□□□□ 0.41
SHKBP1-215ENST00000597649 RNF38Q9H0F5 515 aa17.61■□□□□ 0.41
SHKBP1-215ENST00000597649 MMP17Q9ULZ9 603 aa17.61■□□□□ 0.41
SHKBP1-215ENST00000597649 SMG1Q96Q15 3661 aaKnown RBP17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 MYMKA6NI61 221 aa17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 MAGEA11P43364 429 aa17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 DHPSP49366 369 aaPredicted RBP17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 CASP5P51878 434 aa17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 KCNB1Q14721 858 aa17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 CRY1Q16526 586 aa17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 UAP1L1Q3KQV9 507 aa17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 C11orf74Q86VG3 221 aa17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 TOP6BLQ8N6T0 577 aa17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 DEFB124Q8NES8 71 aa17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 RASSF8Q8NHQ8 419 aa17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 CACTINQ8WUQ7 758 aaKnown RBP17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 PIGKQ92643 395 aa17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 GATA6Q92908 595 aa17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 HVCN1Q96D96 273 aa17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 DNAJC19Q96DA6 116 aa17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 FUBP3Q96I24 572 aaKnown RBP eCLIP17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 FNBP1Q96RU3 617 aa17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 SCNM1Q9BWG6 230 aa17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 FGFBP2Q9BYJ0 223 aa17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 ADAM33Q9BZ11 813 aa17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 PDE11AQ9HCR9 933 aa17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 CRTAC1Q9NQ79 661 aa17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 TMEM74BQ9NUR3 256 aa17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 RBAKQ9NYW8 714 aaPredicted RBP17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 ITGA11Q9UKX5 1188 aa17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 ANAPC1Q9H1A4 1944 aa17.6■□□□□ 0.41
SHKBP1-215ENST00000597649 KIAA1549LQ6ZVL6 1849 aa17.59■□□□□ 0.41
SHKBP1-215ENST00000597649 SCAMP3O14828 347 aaKnown RBP17.59■□□□□ 0.41
SHKBP1-215ENST00000597649 PPP6R2O75170 966 aa17.59■□□□□ 0.41
SHKBP1-215ENST00000597649 NFATC1O95644 943 aa17.59■□□□□ 0.41
SHKBP1-215ENST00000597649 CYP17A1P05093 508 aa17.59■□□□□ 0.41
SHKBP1-215ENST00000597649 KRT19P08727 400 aa17.59■□□□□ 0.41
SHKBP1-215ENST00000597649 ME1P48163 572 aa17.59■□□□□ 0.41
SHKBP1-215ENST00000597649 LHX1P48742 406 aa17.59■□□□□ 0.41
SHKBP1-215ENST00000597649 PSMC1P62191 440 aaKnown RBP17.59■□□□□ 0.41
SHKBP1-215ENST00000597649 RBP5P82980 135 aa17.59■□□□□ 0.41
SHKBP1-215ENST00000597649 COL9A2Q14055 689 aaPredicted RBP17.59■□□□□ 0.41
SHKBP1-215ENST00000597649 L1TD1Q5T7N2 865 aaKnown RBP17.59■□□□□ 0.41
SHKBP1-215ENST00000597649 EMC10Q5UCC4 262 aa17.59■□□□□ 0.41
SHKBP1-215ENST00000597649 LMBRD2Q68DH5 695 aaPredicted RBP17.59■□□□□ 0.41
SHKBP1-215ENST00000597649 TTC30AQ86WT1 665 aa17.59■□□□□ 0.41
SHKBP1-215ENST00000597649 FSIP1Q8NA03 581 aa17.59■□□□□ 0.41
SHKBP1-215ENST00000597649 KBTBD7Q8WVZ9 684 aa17.59■□□□□ 0.41
SHKBP1-215ENST00000597649 SPATA17Q96L03 361 aa17.59■□□□□ 0.41
SHKBP1-215ENST00000597649 ACCSQ96QU6 501 aa17.59■□□□□ 0.41
SHKBP1-215ENST00000597649 CBWD1Q9BRT8 395 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms