RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	NPY5R	Q15761	445 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	ZXDC	Q2QGD7	858 aa	Predicted RBP	5.49	□□□□□ -1.53
SS18-223	ENST00000583595	MFSD14B	Q5SR56	506 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	CFAP58	Q5T655	872 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	MFSD4B	Q5TF39	518 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	TMCO3	Q6UWJ1	677 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	CCDC129	Q6ZRS4	1044 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	UBE3B	Q7Z3V4	1068 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	KCTD20	Q7Z5Y7	419 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	CEP70	Q8NHQ1	597 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	BORCS6	Q96GS4	357 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	C7orf26	Q96N11	449 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	TWNK	Q96RR1	684 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	AP1M1	Q9BXS5	423 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	ZCCHC17	Q9NP64	241 aa	Known RBP	5.49	□□□□□ -1.53
SS18-223	ENST00000583595	MRPS18A	Q9NVS2	196 aa	Known RBP	5.49	□□□□□ -1.53
SS18-223	ENST00000583595	PPP4R1L	Q9P1A2	415 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	CFAP97	Q9P2B7	532 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	CAPN11	Q9UMQ6	739 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	DAPP1	Q9UN19	280 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	PLEKHM1	Q9Y4G2	1056 aa		5.49	□□□□□ -1.53
SS18-223	ENST00000583595	WRN	Q14191	1432 aa	Predicted RBP eCLIP	5.48	□□□□□ -1.53
SS18-223	ENST00000583595	PI4KAP2	A4QPH2	592 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	NPEPPSL1	A6NEC2	478 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	ZNF785	A8K8V0	405 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	NTSR2	O95665	410 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	TK1	P04183	234 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	GNAI2	P04899	355 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	AKR1B1	P15121	316 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	MCC	P23508	829 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	ACVR2A	P27037	513 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	MAPK4	P31152	587 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	GALNS	P34059	522 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	PTTG1IP	P53801	180 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	NAP1L1	P55209	391 aa	Known RBP	5.48	□□□□□ -1.53
SS18-223	ENST00000583595	WNT3A	P56704	352 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	ADAM17	P78536	824 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	DUSP2	Q05923	314 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	FSTL1	Q12841	308 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	ARHGEF7	Q14155	803 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	SMAD1	Q15797	465 aa	Known RBP	5.48	□□□□□ -1.53
SS18-223	ENST00000583595	TRIM71	Q2Q1W2	868 aa	Known RBP	5.48	□□□□□ -1.53
SS18-223	ENST00000583595	AMOT	Q4VCS5	1084 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	ATPAF1	Q5TC12	328 aa	Predicted RBP	5.48	□□□□□ -1.53
SS18-223	ENST00000583595	FCRL6	Q6DN72	434 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	ARHGEF18	Q6ZSZ5	1173 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595		Q6ZUG5	572 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	LARP4	Q71RC2	724 aa	Known RBP eCLIP	5.48	□□□□□ -1.53
SS18-223	ENST00000583595	FAM46D	Q8NEK8	389 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	CHST13	Q8NET6	341 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	KCNG4	Q8TDN1	519 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	GOLGA1	Q92805	767 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	SDCCAG3	Q96C92	435 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	C8orf49	Q96NF6	230 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	TREX2	Q9BQ50	279 aa	Predicted RBP	5.48	□□□□□ -1.53
SS18-223	ENST00000583595	NDC1	Q9BTX1	674 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	MRI1	Q9BV20	369 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	TWSG1	Q9GZX9	223 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	KATNBL1	Q9H079	304 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	KCNH6	Q9H252	994 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	VPS16	Q9H269	839 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	NELFA	Q9H3P2	528 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	MOCS1	Q9NZB8	636 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	DKK4	Q9UBT3	224 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	ADAM29	Q9UKF5	820 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	ATP11B	Q9Y2G3	1177 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595	RBM8A	Q9Y5S9	174 aa	Known RBP	5.48	□□□□□ -1.53
SS18-223	ENST00000583595	MAGED1	Q9Y5V3	778 aa	Predicted RBP	5.48	□□□□□ -1.53
SS18-223	ENST00000583595	NES	P48681	1621 aa		5.48	□□□□□ -1.53
SS18-223	ENST00000583595		E7EVH7	732 aa		5.47	□□□□□ -1.53
SS18-223	ENST00000583595		M0QYG6	137 aa		5.47	□□□□□ -1.53
SS18-223	ENST00000583595	TOR1B	O14657	336 aa		5.47	□□□□□ -1.53
SS18-223	ENST00000583595	PCDH17	O14917	1159 aa		5.47	□□□□□ -1.53
SS18-223	ENST00000583595	COQ9	O75208	318 aa		5.47	□□□□□ -1.53
SS18-223	ENST00000583595	ANXA6	P08133	673 aa		5.47	□□□□□ -1.53
SS18-223	ENST00000583595	VDR	P11473	427 aa		5.47	□□□□□ -1.53
SS18-223	ENST00000583595	GLUL	P15104	373 aa		5.47	□□□□□ -1.53
SS18-223	ENST00000583595	GYPE	P15421	78 aa		5.47	□□□□□ -1.53
SS18-223	ENST00000583595	TPH1	P17752	444 aa		5.47	□□□□□ -1.53
SS18-223	ENST00000583595	ACTN2	P35609	894 aa		5.47	□□□□□ -1.53
SS18-223	ENST00000583595	CPT1A	P50416	773 aa		5.47	□□□□□ -1.53
SS18-223	ENST00000583595	MXRA7	P84157	204 aa		5.47	□□□□□ -1.53
SS18-223	ENST00000583595	DUSP8	Q13202	625 aa		5.47	□□□□□ -1.53
SS18-223	ENST00000583595	ERV3-1	Q14264	604 aa		5.47	□□□□□ -1.53
SS18-223	ENST00000583595	GRM4	Q14833	912 aa		5.47	□□□□□ -1.53
SS18-223	ENST00000583595	SLC5A9	Q2M3M2	681 aa		5.47	□□□□□ -1.53
SS18-223	ENST00000583595	BTBD16	Q32M84	506 aa		5.47	□□□□□ -1.53
SS18-223	ENST00000583595	FAM47A	Q5JRC9	791 aa		5.47	□□□□□ -1.53
SS18-223	ENST00000583595	UTP14C	Q5TAP6	766 aa	Known RBP	5.47	□□□□□ -1.53
SS18-223	ENST00000583595	FAXC	Q5TGI0	409 aa		5.47	□□□□□ -1.53
SS18-223	ENST00000583595	OTUD7B	Q6GQQ9	843 aa		5.47	□□□□□ -1.53
SS18-223	ENST00000583595	BBS12	Q6ZW61	710 aa		5.47	□□□□□ -1.53
SS18-223	ENST00000583595	R3HCC1L	Q7Z5L2	792 aa	Known RBP	5.47	□□□□□ -1.53
SS18-223	ENST00000583595	TMEM57	Q8N5G2	664 aa		5.47	□□□□□ -1.53
SS18-223	ENST00000583595	TTC9B	Q8N6N2	239 aa		5.47	□□□□□ -1.53
SS18-223	ENST00000583595	SLC35B2	Q8TB61	432 aa		5.47	□□□□□ -1.53
SS18-223	ENST00000583595	GFM2	Q969S9	779 aa	Known RBP	5.47	□□□□□ -1.53
SS18-223	ENST00000583595	C3orf49	Q96BT1	292 aa		5.47	□□□□□ -1.53
SS18-223	ENST00000583595	NEIL1	Q96FI4	390 aa	Predicted RBP	5.47	□□□□□ -1.53
SS18-223	ENST00000583595	PACSIN1	Q9BY11	444 aa		5.47	□□□□□ -1.53

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