RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 FBXO22Q8NEZ5 403 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 TPCN2Q8NHX9 752 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 FEZF2Q8TBJ5 459 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 ZNF564Q8TBZ8 553 aaPredicted RBP16.1■□□□□ 0.17
SS18-215ENST00000580642 ATRIPQ8WXE1 791 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 ARHGEF26Q96DR7 871 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 C16orf45Q96MC5 204 aaPredicted RBP16.1■□□□□ 0.17
SS18-215ENST00000580642 NCAPGQ9BPX3 1015 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 C11orf84Q9BUA3 381 aaPredicted RBP16.1■□□□□ 0.17
SS18-215ENST00000580642 TUBB2BQ9BVA1 445 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 TRIM62Q9BVG3 475 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 NUP85Q9BW27 656 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 UBE2OQ9C0C9 1292 aaKnown RBP16.1■□□□□ 0.17
SS18-215ENST00000580642 CNGB3Q9NQW8 809 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 ASNSD1Q9NWL6 643 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 TRIM10Q9UDY6 481 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 AFF4Q9UHB7 1163 aaKnown RBP16.1■□□□□ 0.17
SS18-215ENST00000580642 SALL4Q9UJQ4 1053 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 JRKLQ9Y4A0 524 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.09■□□□□ 0.17
SS18-215ENST00000580642 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.09■□□□□ 0.17
SS18-215ENST00000580642 LINC01553A4QN01 128 aa16.09■□□□□ 0.17
SS18-215ENST00000580642 MYO1FO00160 1098 aa16.09■□□□□ 0.17
SS18-215ENST00000580642 LILRB3O75022 631 aa16.09■□□□□ 0.17
SS18-215ENST00000580642 CPB1P15086 417 aa16.09■□□□□ 0.17
SS18-215ENST00000580642 MAN1A1P33908 653 aa16.09■□□□□ 0.17
SS18-215ENST00000580642 SLC1A1P43005 524 aa16.09■□□□□ 0.17
SS18-215ENST00000580642 TUFMP49411 452 aaKnown RBP16.09■□□□□ 0.17
SS18-215ENST00000580642 RAB33AQ14088 237 aa16.09■□□□□ 0.17
SS18-215ENST00000580642 RAB30Q15771 203 aa16.09■□□□□ 0.17
SS18-215ENST00000580642 EFHC1Q5JVL4 640 aa16.09■□□□□ 0.17
SS18-215ENST00000580642 C9orf50Q5SZB4 431 aa16.09■□□□□ 0.17
SS18-215ENST00000580642 RTL10Q7L3V2 364 aa16.09■□□□□ 0.17
SS18-215ENST00000580642 VPS52Q8N1B4 723 aa16.09■□□□□ 0.17
SS18-215ENST00000580642 LRRC57Q8N9N7 239 aa16.09■□□□□ 0.17
SS18-215ENST00000580642 KIF18AQ8NI77 898 aa16.09■□□□□ 0.17
SS18-215ENST00000580642 ZNF461Q8TAF7 563 aa16.09■□□□□ 0.17
SS18-215ENST00000580642 IRGQQ8WZA9 623 aa16.09■□□□□ 0.17
SS18-215ENST00000580642 SMOQ99835 787 aa16.09■□□□□ 0.17
SS18-215ENST00000580642 ZBP1Q9H171 429 aa16.09■□□□□ 0.17
SS18-215ENST00000580642 LRRC4Q9HBW1 653 aa16.09■□□□□ 0.17
SS18-215ENST00000580642 ST7Q9NRC1 585 aa16.09■□□□□ 0.17
SS18-215ENST00000580642 TMLHEQ9NVH6 421 aa16.09■□□□□ 0.17
SS18-215ENST00000580642 TFR2Q9UP52 801 aa16.09■□□□□ 0.17
SS18-215ENST00000580642 PAXBP1Q9Y5B6 917 aa16.09■□□□□ 0.17
SS18-215ENST00000580642 PTPRSQ13332 1948 aa16.08■□□□□ 0.16
SS18-215ENST00000580642 TMEM191CA6NGB0 347 aa16.08■□□□□ 0.16
SS18-215ENST00000580642 E5RJQ4 531 aa16.08■□□□□ 0.16
SS18-215ENST00000580642 CLDN5O00501 218 aa16.08■□□□□ 0.16
SS18-215ENST00000580642 ABLIM3O94929 683 aa16.08■□□□□ 0.16
SS18-215ENST00000580642 ABL1P00519 1130 aa16.08■□□□□ 0.16
SS18-215ENST00000580642 ERBB2P04626 1255 aa16.08■□□□□ 0.16
SS18-215ENST00000580642 KRT3P12035 628 aa16.08■□□□□ 0.16
SS18-215ENST00000580642 DESP17661 470 aa16.08■□□□□ 0.16
SS18-215ENST00000580642 BDNFP23560 247 aa16.08■□□□□ 0.16
SS18-215ENST00000580642 SSTR3P32745 418 aaPredicted RBP16.08■□□□□ 0.16
SS18-215ENST00000580642 NDUFV1P49821 464 aa16.08■□□□□ 0.16
SS18-215ENST00000580642 MAP3K7CLP57077 242 aa16.08■□□□□ 0.16
SS18-215ENST00000580642 RPL10AP62906 217 aaKnown RBP16.08■□□□□ 0.16
SS18-215ENST00000580642 SLC6A3Q01959 620 aa16.08■□□□□ 0.16
SS18-215ENST00000580642 BEND5Q7L4P6 421 aa16.08■□□□□ 0.16
SS18-215ENST00000580642 SLC26A9Q7LBE3 791 aa16.08■□□□□ 0.16
SS18-215ENST00000580642 SIX6OS1Q8N1H7 587 aa16.08■□□□□ 0.16
SS18-215ENST00000580642 KLHL23Q8NBE8 558 aa16.08■□□□□ 0.16
SS18-215ENST00000580642 SPATA17Q96L03 361 aa16.08■□□□□ 0.16
SS18-215ENST00000580642 TGS1Q96RS0 853 aaKnown RBP16.08■□□□□ 0.16
SS18-215ENST00000580642 TMEM209Q96SK2 561 aa16.08■□□□□ 0.16
SS18-215ENST00000580642 LPIN3Q9BQK8 851 aa16.08■□□□□ 0.16
SS18-215ENST00000580642 CLSTN3Q9BQT9 956 aa16.08■□□□□ 0.16
SS18-215ENST00000580642 SELENOOQ9BVL4 669 aa16.08■□□□□ 0.16
SS18-215ENST00000580642 NGRNQ9NPE2 291 aaKnown RBP16.08■□□□□ 0.16
SS18-215ENST00000580642 EHD2Q9NZN4 543 aa16.08■□□□□ 0.16
SS18-215ENST00000580642 IP6K2Q9UHH9 426 aa16.08■□□□□ 0.16
SS18-215ENST00000580642 COG5Q9UP83 839 aa16.08■□□□□ 0.16
SS18-215ENST00000580642 CDY1Q9Y6F8 540 aa16.08■□□□□ 0.16
SS18-215ENST00000580642 GRID2IPA4D2P6 1211 aa16.07■□□□□ 0.16
SS18-215ENST00000580642 MTMR11A4FU01 709 aa16.07■□□□□ 0.16
SS18-215ENST00000580642 CTAGE9A4FU28 777 aa16.07■□□□□ 0.16
SS18-215ENST00000580642 HHLA1C9JL84 531 aa16.07■□□□□ 0.16
SS18-215ENST00000580642 BUB1O43683 1085 aa16.07■□□□□ 0.16
SS18-215ENST00000580642 MOCS3O95396 460 aa16.07■□□□□ 0.16
SS18-215ENST00000580642 PRLRP16471 622 aa16.07■□□□□ 0.16
SS18-215ENST00000580642 CASQ1P31415 396 aa16.07■□□□□ 0.16
SS18-215ENST00000580642 CTNNB1P35222 781 aa16.07■□□□□ 0.16
SS18-215ENST00000580642 ERVK-21P61565 698 aa16.07■□□□□ 0.16
SS18-215ENST00000580642 ROR1Q01973 937 aa16.07■□□□□ 0.16
SS18-215ENST00000580642 PIGHQ14442 188 aaPredicted RBP16.07■□□□□ 0.16
SS18-215ENST00000580642 PM20D1Q6GTS8 502 aa16.07■□□□□ 0.16
SS18-215ENST00000580642 DCUN1D2Q6PH85 259 aa16.07■□□□□ 0.16
SS18-215ENST00000580642 OLFML1Q6UWY5 402 aa16.07■□□□□ 0.16
SS18-215ENST00000580642 NIPA2Q8N8Q9 360 aa16.07■□□□□ 0.16
SS18-215ENST00000580642 ZMIZ2Q8NF64 920 aa16.07■□□□□ 0.16
SS18-215ENST00000580642 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.07■□□□□ 0.16
SS18-215ENST00000580642 EMILIN2Q9BXX0 1053 aa16.07■□□□□ 0.16
SS18-215ENST00000580642 OSGEPQ9NPF4 335 aa16.07■□□□□ 0.16
SS18-215ENST00000580642 USP3Q9Y6I4 520 aa16.07■□□□□ 0.16
SS18-215ENST00000580642 CAPN6Q9Y6Q1 641 aa16.07■□□□□ 0.16
SS18-215ENST00000580642 LCHNA4D1U4 455 aa16.06■□□□□ 0.16
SS18-215ENST00000580642 MIF4GDA9UHW6 222 aaKnown RBP16.06■□□□□ 0.16
SS18-215ENST00000580642 TULP2O00295 520 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms