RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 SFTPA1Q8IWL2 248 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 SCFD1Q8WVM8 642 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 PCED1BQ96HM7 432 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 HPDLQ96IR7 371 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 ANKRD36BP1Q96IX9 119 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 ZC3H10Q96K80 434 aaKnown RBP7.19□□□□□ -1.26
VPS53-213ENST00000572334 SPATA17Q96L03 361 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 NAP1L5Q96NT1 182 aaPredicted RBP7.19□□□□□ -1.26
VPS53-213ENST00000572334 HHIPQ96QV1 700 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 C7orf25Q9BPX7 421 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 SYT15Q9BQS2 421 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 RNF38Q9H0F5 515 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 XYLT2Q9H1B5 865 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 ARRDC1-AS1Q9H2J1 176 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 TNMDQ9H2S6 317 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 SMOC1Q9H4F8 434 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 ZSCAN16Q9H4T2 348 aaPredicted RBP7.19□□□□□ -1.26
VPS53-213ENST00000572334 AGPAT3Q9NRZ7 376 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 TFIP11Q9UBB9 837 aaKnown RBP7.19□□□□□ -1.26
VPS53-213ENST00000572334 UXTQ9UBK9 157 aaPredicted RBP7.19□□□□□ -1.26
VPS53-213ENST00000572334 CDH9Q9ULB4 789 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 RAB23Q9ULC3 237 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 ARHGAP26Q9UNA1 814 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 CHD6Q8TD26 2715 aa7.19□□□□□ -1.26
VPS53-213ENST00000572334 TRAV19A0A0A6YYK7 116 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 ZNF840PA6NDX5 716 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 ZNF233A6NK53 670 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 K7EQS6 105 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 DCLK1O15075 740 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 KIAA0391O15091 583 aaKnown RBP7.18□□□□□ -1.26
VPS53-213ENST00000572334 CLIC2O15247 247 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 SPTLC2O15270 562 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 TACC1O75410 805 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 RPP40O75818 363 aaKnown RBP7.18□□□□□ -1.26
VPS53-213ENST00000572334 OAS1P00973 400 aaKnown RBP7.18□□□□□ -1.26
VPS53-213ENST00000572334 PDGFRBP09619 1106 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 USP17L7P0C7H9 530 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 TMEM191BP0C7N4 346 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 ZNF806P0C7X5 589 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 DRD1P21728 446 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 PCSK1P29120 753 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 TXLNAP40222 546 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 LIMK1P53667 647 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 TERF1P54274 439 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 CYP24A1Q07973 514 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 GRSF1Q12849 480 aaKnown RBP eCLIP7.18□□□□□ -1.26
VPS53-213ENST00000572334 PSMD6Q15008 389 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 STK38Q15208 465 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 DUOXA2Q1HG44 320 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 BMT2Q1RMZ1 405 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 PLK5Q496M5 336 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 PPM1JQ5JR12 505 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 VSTM1Q6UX27 236 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 PAQR9Q6ZVX9 377 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 SYT13Q7L8C5 426 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 CACNA2D4Q7Z3S7 1137 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 SCN4BQ8IWT1 228 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 CCDC65Q8IXS2 484 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 CAMKK1Q8N5S9 505 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 RPLP0P6Q8NHW5 317 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 MYCBPAPQ8TBZ2 947 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 SH3RF2Q8TEC5 729 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 NOC3LQ8WTT2 800 aaKnown RBP7.18□□□□□ -1.26
VPS53-213ENST00000572334 CD101Q93033 1021 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 ELMO3Q96BJ8 720 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 LOXL4Q96JB6 756 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 ZFRQ96KR1 1074 aaKnown RBP7.18□□□□□ -1.26
VPS53-213ENST00000572334 C8orf48Q96LL4 319 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 CGRRF1Q99675 332 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 P2RY13Q9BPV8 354 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 DUSP15Q9H1R2 295 aaPredicted RBP7.18□□□□□ -1.26
VPS53-213ENST00000572334 DPEP3Q9H4B8 488 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 TRPC7Q9HCX4 862 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 DUS2Q9NX74 493 aaKnown RBP7.18□□□□□ -1.26
VPS53-213ENST00000572334 MAGEC2Q9UBF1 373 aaPredicted RBP7.18□□□□□ -1.26
VPS53-213ENST00000572334 KNL1Q8NG31 2342 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 IGF2RP11717 2491 aa7.18□□□□□ -1.26
VPS53-213ENST00000572334 F8VP50 259 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 K7ELQ4 463 aaPredicted RBP7.17□□□□□ -1.26
VPS53-213ENST00000572334 LEFTY2O00292 366 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 CLDN5O00501 218 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 TNFRSF10BO14763 440 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 KLRC4O43908 158 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 AKAP3O75969 853 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 KRT37O76014 449 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 YEATS4O95619 227 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 STAU1O95793 577 aaKnown RBP7.17□□□□□ -1.26
VPS53-213ENST00000572334 CYP17A1P05093 508 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 CKMP06732 381 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 HDCP19113 662 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 GNL1P36915 607 aaPredicted RBP7.17□□□□□ -1.26
VPS53-213ENST00000572334 IFNAR2P48551 515 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 CASP4P49662 377 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 PGFP49763 221 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 MYL6P60660 151 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 NOP14P78316 857 aaKnown RBP7.17□□□□□ -1.26
VPS53-213ENST00000572334 CLDN10P78369 228 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 SLC7A9P82251 487 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 MYO1EQ12965 1108 aa7.17□□□□□ -1.26
VPS53-213ENST00000572334 CUL4BQ13620 913 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms