RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 CDH6P55285 790 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 ENPEPQ07075 957 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 MYO1EQ12965 1108 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 SURF1Q15526 300 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 KIZQ2M2Z5 673 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 SESTD1Q86VW0 696 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 PYROXD1Q8WU10 500 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 CDCA5Q96FF9 252 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 TMEM176AQ96HP8 235 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 RMI1Q9H9A7 625 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 PTPRHQ9HD43 1115 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 ERAP1Q9NZ08 941 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 DNAH12Q6ZR08 3092 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 TCRBV5S1A1TA0A578 114 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 SNX3O60493 162 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 UBOX5O94941 541 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 SLC25A27O95847 323 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 LGALS2P05162 132 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 CA4P22748 312 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 KDELR1P24390 212 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 PHKA2P46019 1235 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 GTF2A1P52655 376 aaPredicted RBP9.18□□□□□ -0.94
LINC00558-201ENST00000569422 INHBEP58166 350 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 EIF3EP60228 445 aaKnown RBP9.18□□□□□ -0.94
LINC00558-201ENST00000569422 STAT4Q14765 748 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 MSS51Q4VC12 460 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 FNBP1LQ5T0N5 605 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 CENPUQ71F23 418 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 PLPPR4Q7Z2D5 763 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 PIGWQ7Z7B1 504 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 XYLT1Q86Y38 959 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 TBC1D31Q96DN5 1066 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 KIF12Q96FN5 646 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 SLCO1B3Q9NPD5 702 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.18□□□□□ -0.94
LINC00558-201ENST00000569422 BAIAP2L1Q9UHR4 511 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 STRIP2Q9ULQ0 834 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 USP18Q9UMW8 372 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 STK38LQ9Y2H1 464 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 DOCK1Q14185 1865 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 CEP350Q5VT06 3117 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 IGKV6-21A0A0C4DH24 114 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 SIGLEC16A6NMB1 481 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 E5RJQ4 531 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 HCRTO43612 131 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 B4GALT4O60513 344 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 RBP3P10745 1247 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 PDGFRAP16234 1089 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 OSBPP22059 807 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 SLC25A11Q02978 314 aaKnown RBP9.17□□□□□ -0.94
LINC00558-201ENST00000569422 CCDC15Q0P6D6 951 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 SMAD1Q15797 465 aaKnown RBP9.17□□□□□ -0.94
LINC00558-201ENST00000569422 HIF1AQ16665 826 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 SLC10A6Q3KNW5 377 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 TNFAIP8L3Q5GJ75 292 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 PPP1R15BQ5SWA1 713 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 CCDC62Q6P9F0 684 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 DARS2Q6PI48 645 aaKnown RBP9.17□□□□□ -0.94
LINC00558-201ENST00000569422 ARHGEF18Q6ZSZ5 1173 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 C3orf62Q6ZUJ4 267 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 PALM2Q8IXS6 379 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 SPATA18Q8TC71 538 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 TRABDQ9H4I3 376 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 DDX56Q9NY93 547 aaKnown RBP9.17□□□□□ -0.94
LINC00558-201ENST00000569422 PNMA3Q9UL41 463 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 CHMP2BQ9UQN3 213 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 USP15Q9Y4E8 981 aaPredicted RBP9.17□□□□□ -0.94
LINC00558-201ENST00000569422 SNX9Q9Y5X1 595 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 RLFQ13129 1914 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 H7C0C1 242 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 PPEF2O14830 753 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 AVILO75366 819 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 C22orf31O95567 290 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 FOXN2P32314 431 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 RPA3P35244 121 aaPredicted RBP9.17□□□□□ -0.94
LINC00558-201ENST00000569422 RPL22P35268 128 aaKnown RBP9.17□□□□□ -0.94
LINC00558-201ENST00000569422 ATP5OP48047 213 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 TMEM132DQ14C87 1099 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 OASLQ15646 514 aaKnown RBP9.17□□□□□ -0.94
LINC00558-201ENST00000569422 PPP6R3Q5H9R7 873 aaPredicted RBP9.17□□□□□ -0.94
LINC00558-201ENST00000569422 CYB5D1Q6P9G0 228 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 ACOT1Q86TX2 421 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 SCUBE3Q8IX30 993 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 NETO2Q8NC67 525 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 PHC3Q8NDX5 983 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.17□□□□□ -0.94
LINC00558-201ENST00000569422 RXFP2Q8WXD0 754 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 SLX1AQ9BQ83 275 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 PITPNM3Q9BZ71 974 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 ZNF518BQ9C0D4 1074 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 PDZD7Q9H5P4 517 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 ACTR5Q9H9F9 607 aaPredicted RBP9.17□□□□□ -0.94
LINC00558-201ENST00000569422 TSPAN16Q9UKR8 245 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 TRIM33Q9UPN9 1127 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 TNFSF13BQ9Y275 285 aa9.17□□□□□ -0.94
LINC00558-201ENST00000569422 ANKRD33BA6NCL7 494 aa9.16□□□□□ -0.94
LINC00558-201ENST00000569422 LGR5O75473 907 aa9.16□□□□□ -0.94
LINC00558-201ENST00000569422 SUN1O94901 812 aa9.16□□□□□ -0.94
LINC00558-201ENST00000569422 KRT7P08729 469 aa9.16□□□□□ -0.94
LINC00558-201ENST00000569422 PROZP22891 400 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms