RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 PLEKHG4Q58EX7 1191 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 OR6B2Q6IFH4 312 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 TRNP1Q6NT89 227 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 DARS2Q6PI48 645 aaKnown RBP14.12□□□□□ -0.15
CLK3-215ENST00000564353 METTL7BQ6UX53 244 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 OTOAQ7RTW8 1153 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 LRRC6Q86X45 466 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 XYLT1Q86Y38 959 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 RFWD2Q8NHY2 731 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 SLC35B2Q8TB61 432 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 UTP4Q969X6 686 aaKnown RBP14.12□□□□□ -0.15
CLK3-215ENST00000564353 PRR11Q96HE9 360 aaPredicted RBP14.12□□□□□ -0.15
CLK3-215ENST00000564353 C12orf42Q96LP6 360 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 GPR20Q99678 358 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 FAM49BQ9NUQ9 324 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 WDR81Q562E7 1941 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 A0A087WZ62 844 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 ALOX15BO15296 676 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 NEBLO76041 1014 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 RPS12P25398 132 aaKnown RBP14.12□□□□□ -0.15
CLK3-215ENST00000564353 ELK3P41970 407 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 NEDD9Q14511 834 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 ZC3H12AQ5D1E8 599 aaKnown RBP14.12□□□□□ -0.15
CLK3-215ENST00000564353 MPZL3Q6UWV2 235 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 ZPBP2Q6X784 338 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 CTAGE3PQ8IX95 158 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 SLC4A11Q8NBS3 891 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 DENND1AQ8TEH3 1009 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 TTC17Q96AE7 1141 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 LRRC37BQ96QE4 947 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 FDXACB1Q9BRP7 624 aaPredicted RBP14.12□□□□□ -0.15
CLK3-215ENST00000564353 ADPGKQ9BRR6 497 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 RPF1Q9H9Y2 349 aaKnown RBP14.12□□□□□ -0.15
CLK3-215ENST00000564353 PCDH9Q9HC56 1237 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 PSMC3IPQ9P2W1 217 aaPredicted RBP14.12□□□□□ -0.15
CLK3-215ENST00000564353 MCM8Q9UJA3 840 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 USP18Q9UMW8 372 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 ARID2Q68CP9 1835 aa14.12□□□□□ -0.15
CLK3-215ENST00000564353 KAT6AQ92794 2004 aa14.11□□□□□ -0.15
CLK3-215ENST00000564353 PHIPQ8WWQ0 1821 aa14.11□□□□□ -0.15
CLK3-215ENST00000564353 H7C0C1 242 aa14.11□□□□□ -0.15
CLK3-215ENST00000564353 FZD9O00144 591 aa14.11□□□□□ -0.15
CLK3-215ENST00000564353 ITGAVP06756 1048 aa14.11□□□□□ -0.15
CLK3-215ENST00000564353 EIF4BP23588 611 aaKnown RBP14.11□□□□□ -0.15
CLK3-215ENST00000564353 ICAM3P32942 547 aa14.11□□□□□ -0.15
CLK3-215ENST00000564353 ATP5OP48047 213 aa14.11□□□□□ -0.15
CLK3-215ENST00000564353 GEMIN4P57678 1058 aaKnown RBP14.11□□□□□ -0.15
CLK3-215ENST00000564353 TAF1BQ53T94 588 aaPredicted RBP14.11□□□□□ -0.15
CLK3-215ENST00000564353 PPP6R3Q5H9R7 873 aaPredicted RBP14.11□□□□□ -0.15
CLK3-215ENST00000564353 MTDHQ86UE4 582 aaKnown RBP14.11□□□□□ -0.15
CLK3-215ENST00000564353 DNERQ8NFT8 737 aa14.11□□□□□ -0.15
CLK3-215ENST00000564353 NGRNQ9NPE2 291 aaKnown RBP14.11□□□□□ -0.15
CLK3-215ENST00000564353 TTC36A6NLP5 189 aa14.11□□□□□ -0.15
CLK3-215ENST00000564353 E5RJQ4 531 aa14.11□□□□□ -0.15
CLK3-215ENST00000564353 STAG3L1P0CL83 205 aa14.11□□□□□ -0.15
CLK3-215ENST00000564353 EPHB2P29323 1055 aa14.11□□□□□ -0.15
CLK3-215ENST00000564353 ATXN1P54253 815 aaKnown RBP14.11□□□□□ -0.15
CLK3-215ENST00000564353 MCL1Q07820 350 aa14.11□□□□□ -0.15
CLK3-215ENST00000564353 TTLL12Q14166 644 aaPredicted RBP14.11□□□□□ -0.15
CLK3-215ENST00000564353 PRPF39Q86UA1 669 aaKnown RBP14.11□□□□□ -0.15
CLK3-215ENST00000564353 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.11□□□□□ -0.15
CLK3-215ENST00000564353 ZNF75CPQ92670 426 aaPredicted RBP14.11□□□□□ -0.15
CLK3-215ENST00000564353 MIS12Q9H081 205 aa14.11□□□□□ -0.15
CLK3-215ENST00000564353 AKT3Q9Y243 479 aa14.11□□□□□ -0.15
CLK3-215ENST00000564353 SIGLEC16A6NMB1 481 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 KBTBD13C9JR72 458 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 SKAP2O75563 359 aaPredicted RBP14.1□□□□□ -0.15
CLK3-215ENST00000564353 LSM8O95777 96 aaKnown RBP14.1□□□□□ -0.15
CLK3-215ENST00000564353 ZNF286BP0CG31 522 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 TXNP10599 105 aaKnown RBP14.1□□□□□ -0.15
CLK3-215ENST00000564353 EFNA5P52803 228 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 ARL4CP56559 192 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 INHBEP58166 350 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 YWHAEP62258 255 aaKnown RBP14.1□□□□□ -0.15
CLK3-215ENST00000564353 HADHQ16836 314 aaKnown RBP14.1□□□□□ -0.15
CLK3-215ENST00000564353 KBTBD12Q3ZCT8 623 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 IER5Q5VY09 327 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 RFX8Q6ZV50 586 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 PPIL6Q8IXY8 311 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 CHST13Q8NET6 341 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 NKD2Q969F2 451 aaPredicted RBP14.1□□□□□ -0.15
CLK3-215ENST00000564353 FAM111AQ96PZ2 611 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 B3GNT5Q9BYG0 378 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 ZNF395Q9H8N7 513 aaPredicted RBP14.1□□□□□ -0.15
CLK3-215ENST00000564353 NKX1-2Q9UD57 310 aaPredicted RBP14.1□□□□□ -0.15
CLK3-215ENST00000564353 FARP1Q9Y4F1 1045 aaPredicted RBP14.1□□□□□ -0.15
CLK3-215ENST00000564353 CCDC195A0A1B0GUA6 201 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 UGT1A9O60656 530 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 TOP3BO95985 862 aaKnown RBP14.1□□□□□ -0.15
CLK3-215ENST00000564353 TFE3P19532 575 aaPredicted RBP14.1□□□□□ -0.15
CLK3-215ENST00000564353 CALRP27797 417 aaKnown RBP14.1□□□□□ -0.15
CLK3-215ENST00000564353 IRX4P78413 519 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 PTPN11Q06124 597 aaPredicted RBP14.1□□□□□ -0.15
CLK3-215ENST00000564353 BMPR2Q13873 1038 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 NAA25Q14CX7 972 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 SETDB1Q15047 1291 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 NAT8LQ8N9F0 302 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 SERAC1Q96JX3 654 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 MECRQ9BV79 373 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 UGT1A7Q9HAW7 530 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms