RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 NAALADL1Q9UQQ1 740 aa6.49□□□□□ -1.37
CLK3-212ENST00000563418 ZNF532Q9HCE3 1301 aa6.49□□□□□ -1.37
CLK3-212ENST00000563418 ABCC10Q5T3U5 1492 aa6.49□□□□□ -1.37
CLK3-212ENST00000563418 KIF28PB7ZC32 967 aa6.49□□□□□ -1.37
CLK3-212ENST00000563418 TNFRSF21O75509 655 aa6.49□□□□□ -1.37
CLK3-212ENST00000563418 CAPRIN1Q14444 709 aaKnown RBP6.49□□□□□ -1.37
CLK3-212ENST00000563418 KCNT1Q5JUK3 1230 aa6.49□□□□□ -1.37
CLK3-212ENST00000563418 SAMD4BQ5PRF9 694 aaKnown RBP6.49□□□□□ -1.37
CLK3-212ENST00000563418 RHPN2Q8IUC4 686 aa6.49□□□□□ -1.37
CLK3-212ENST00000563418 PPIL6Q8IXY8 311 aa6.49□□□□□ -1.37
CLK3-212ENST00000563418 IFNL3Q8IZI9 196 aa6.49□□□□□ -1.37
CLK3-212ENST00000563418 PQLC1Q8N2U9 271 aa6.49□□□□□ -1.37
CLK3-212ENST00000563418 MIGA1Q8NAN2 632 aa6.49□□□□□ -1.37
CLK3-212ENST00000563418 TUFT1Q9NNX1 390 aa6.49□□□□□ -1.37
CLK3-212ENST00000563418 FAM32AQ9Y421 112 aaKnown RBP6.49□□□□□ -1.37
CLK3-212ENST00000563418 TSC22D2O75157 780 aa6.49□□□□□ -1.37
CLK3-212ENST00000563418 ZNF211Q13398 564 aaPredicted RBP6.49□□□□□ -1.37
CLK3-212ENST00000563418 TFDP2Q14188 446 aa6.49□□□□□ -1.37
CLK3-212ENST00000563418 TTI2Q6NXR4 508 aa6.49□□□□□ -1.37
CLK3-212ENST00000563418 CLNKQ7Z7G1 428 aa6.49□□□□□ -1.37
CLK3-212ENST00000563418 ELMOD2Q8IZ81 293 aa6.49□□□□□ -1.37
CLK3-212ENST00000563418 CCSER1Q9C0I3 900 aa6.49□□□□□ -1.37
CLK3-212ENST00000563418 ARMC1Q9NVT9 282 aa6.49□□□□□ -1.37
CLK3-212ENST00000563418 ALOX12P18054 663 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 COG2Q14746 738 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 QPRTQ15274 297 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 TMEM139Q8IV31 216 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 P3H2Q8IVL5 708 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 ASCC1Q8N9N2 400 aaKnown RBP6.48□□□□□ -1.37
CLK3-212ENST00000563418 ZNF507Q8TCN5 953 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 STARD8Q92502 1023 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 EPB41L1Q9H4G0 881 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 PLCL2Q9UPR0 1127 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 FAM237AA0A1B0GTK4 181 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 RGS5O15539 181 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 LRRN2O75325 713 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 PAMP19021 973 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 OSBPP22059 807 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 ZAP70P43403 619 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 RAD51Q06609 339 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 BOLA3Q53S33 107 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 KLHL17Q6TDP4 642 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 STOX1Q6ZVD7 989 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 HAUS6Q7Z4H7 955 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 SLC13A5Q86YT5 568 aaPredicted RBP6.48□□□□□ -1.37
CLK3-212ENST00000563418 DHRSXQ8N5I4 330 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 FITM2Q8N6M3 262 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 TMIEQ8NEW7 156 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 BLOC1S5Q8TDH9 187 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 AGBL1Q96MI9 1066 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 CCNB1IP1Q9NPC3 277 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 DOLKQ9UPQ8 538 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 RNF17Q9BXT8 1623 aaKnown RBP6.48□□□□□ -1.37
CLK3-212ENST00000563418 UNC13BO14795 1591 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 A0A0G2JPF8 293 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 HNRNPCL3B7ZW38 293 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 E9PBE3 544 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 HNRNPCL4P0DMR1 293 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 PRKACAP17612 351 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 IFI35P80217 286 aaPredicted RBP6.48□□□□□ -1.37
CLK3-212ENST00000563418 BFSP2Q13515 415 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 DMC1Q14565 340 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 PERM1Q5SV97 790 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 DSTYKQ6XUX3 929 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 BBS5Q8N3I7 341 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 LBHD1Q9BQE6 289 aaPredicted RBP6.48□□□□□ -1.37
CLK3-212ENST00000563418 MLXQ9UH92 298 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 ENOPH1Q9UHY7 261 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 TRMT112Q9UI30 125 aaKnown RBP6.48□□□□□ -1.37
CLK3-212ENST00000563418 BMP10O95393 424 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 TRIM23P36406 574 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 AUHQ13825 339 aaKnown RBP6.48□□□□□ -1.37
CLK3-212ENST00000563418 CCDC85BQ15834 202 aaPredicted RBP6.48□□□□□ -1.37
CLK3-212ENST00000563418 EFL1Q7Z2Z2 1120 aaKnown RBP6.48□□□□□ -1.37
CLK3-212ENST00000563418 SNX32Q86XE0 403 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 MB21D2Q8IYB1 491 aaPredicted RBP6.48□□□□□ -1.37
CLK3-212ENST00000563418 UBE2TQ9NPD8 197 aaPredicted RBP6.48□□□□□ -1.37
CLK3-212ENST00000563418 CNOT8Q9UFF9 292 aaKnown RBP6.48□□□□□ -1.37
CLK3-212ENST00000563418 PRKAG3Q9UGI9 489 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 PHF11Q9UIL8 331 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 MRPL11Q9Y3B7 192 aaKnown RBP6.48□□□□□ -1.37
CLK3-212ENST00000563418 MROH5Q6ZUA9 1318 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 TRIM13O60858 407 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 PEX11AO75192 247 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 YES1P07947 543 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 SLC26A3P40879 764 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 C1QTNF12Q5T7M4 302 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 PDPK2PQ6A1A2 396 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 TOM1L2Q6ZVM7 507 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 SPERTQ8NA61 448 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 PSMA8Q8TAA3 256 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 UBASH3BQ8TF42 649 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 SGF29Q96ES7 293 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 CEP170P1Q96L14 293 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 ILKAPQ9H0C8 392 aaPredicted RBP6.48□□□□□ -1.37
CLK3-212ENST00000563418 RUBCNLQ9H714 662 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 SSU72Q9NP77 194 aaKnown RBP6.48□□□□□ -1.37
CLK3-212ENST00000563418 MARCOQ9UEW3 520 aaPredicted RBP6.48□□□□□ -1.37
CLK3-212ENST00000563418 SHOC2Q9UQ13 582 aa6.48□□□□□ -1.37
CLK3-212ENST00000563418 RBMX2Q9Y388 322 aaKnown RBP6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms