RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 DPH6Q7L8W6 267 aa12.44□□□□□ -0.42
USP3-220ENST00000561381 WDR49Q8IV35 697 aa12.44□□□□□ -0.42
USP3-220ENST00000561381 IQUBQ8NA54 791 aa12.44□□□□□ -0.42
USP3-220ENST00000561381 SH3RF2Q8TEC5 729 aa12.44□□□□□ -0.42
USP3-220ENST00000561381 OSCP1Q8WVF1 389 aa12.44□□□□□ -0.42
USP3-220ENST00000561381 SCFD1Q8WVM8 642 aa12.44□□□□□ -0.42
USP3-220ENST00000561381 EZH1Q92800 747 aaPredicted RBP12.44□□□□□ -0.42
USP3-220ENST00000561381 CCDC127Q96BQ5 260 aa12.44□□□□□ -0.42
USP3-220ENST00000561381 PCED1BQ96HM7 432 aa12.44□□□□□ -0.42
USP3-220ENST00000561381 ZNF396Q96N95 335 aaPredicted RBP12.44□□□□□ -0.42
USP3-220ENST00000561381 P2RY13Q9BPV8 354 aa12.44□□□□□ -0.42
USP3-220ENST00000561381 C7orf25Q9BPX7 421 aa12.44□□□□□ -0.42
USP3-220ENST00000561381 LRRC27Q9C0I9 530 aa12.44□□□□□ -0.42
USP3-220ENST00000561381 GZF1Q9H116 711 aaPredicted RBP12.44□□□□□ -0.42
USP3-220ENST00000561381 BLZF1Q9H2G9 400 aa12.44□□□□□ -0.42
USP3-220ENST00000561381 LINC00597Q9H2U6 94 aa12.44□□□□□ -0.42
USP3-220ENST00000561381 CUEDC2Q9H467 287 aa12.44□□□□□ -0.42
USP3-220ENST00000561381 DUS2Q9NX74 493 aaKnown RBP12.44□□□□□ -0.42
USP3-220ENST00000561381 MAGEC2Q9UBF1 373 aaPredicted RBP12.44□□□□□ -0.42
USP3-220ENST00000561381 R3HCC1Q9Y3T6 440 aaKnown RBP12.44□□□□□ -0.42
USP3-220ENST00000561381 PCDHGA4Q9Y5G9 962 aa12.44□□□□□ -0.42
USP3-220ENST00000561381 PTPRDP23468 1912 aa12.43□□□□□ -0.42
USP3-220ENST00000561381 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.43□□□□□ -0.42
USP3-220ENST00000561381 POLR2DO15514 142 aaKnown RBP12.43□□□□□ -0.42
USP3-220ENST00000561381 YEATS4O95619 227 aa12.43□□□□□ -0.42
USP3-220ENST00000561381 SDHBP21912 280 aa12.43□□□□□ -0.42
USP3-220ENST00000561381 GRIK1P39086 918 aa12.43□□□□□ -0.42
USP3-220ENST00000561381 CACNA2D1P54289 1103 aa12.43□□□□□ -0.42
USP3-220ENST00000561381 AMPD3Q01432 767 aa12.43□□□□□ -0.42
USP3-220ENST00000561381 CYP24A1Q07973 514 aa12.43□□□□□ -0.42
USP3-220ENST00000561381 EHHADHQ08426 723 aa12.43□□□□□ -0.42
USP3-220ENST00000561381 PSMD6Q15008 389 aa12.43□□□□□ -0.42
USP3-220ENST00000561381 CCDC6Q16204 474 aa12.43□□□□□ -0.42
USP3-220ENST00000561381 EML3Q32P44 896 aa12.43□□□□□ -0.42
USP3-220ENST00000561381 MDH1BQ5I0G3 518 aa12.43□□□□□ -0.42
USP3-220ENST00000561381 C4orf50Q6ZRC1 276 aa12.43□□□□□ -0.42
USP3-220ENST00000561381 PRR23CQ6ZRP0 262 aa12.43□□□□□ -0.42
USP3-220ENST00000561381 ZNF516Q92618 1163 aa12.43□□□□□ -0.42
USP3-220ENST00000561381 CGRRF1Q99675 332 aa12.43□□□□□ -0.42
USP3-220ENST00000561381 RTKNQ9BST9 563 aa12.43□□□□□ -0.42
USP3-220ENST00000561381 DPEP3Q9H4B8 488 aa12.43□□□□□ -0.42
USP3-220ENST00000561381 KIAA1586Q9HCI6 787 aa12.43□□□□□ -0.42
USP3-220ENST00000561381 TMEM30AQ9NV96 361 aa12.43□□□□□ -0.42
USP3-220ENST00000561381 ANTXRLA6NF34 631 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 F8VP50 259 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 AXIN1O15169 862 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 LRP3O75074 770 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 HDCP19113 662 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 TNNI1P19237 187 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 DRD1P21728 446 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 GNL1P36915 607 aaPredicted RBP12.42□□□□□ -0.42
USP3-220ENST00000561381 AFMP43652 599 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 IFNAR2P48551 515 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 CASP4P49662 377 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 KCNB1Q14721 858 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 CSRP2Q16527 193 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 VSTM1Q6UX27 236 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 UNC13DQ70J99 1090 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 HS2ST1Q7LGA3 356 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 KBTBD6Q86V97 674 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 GRAMD1CQ8IYS0 662 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 CPA6Q8N4T0 437 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 FSIP1Q8NA03 581 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 OR6B3Q8NGW1 331 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 RPLP0P6Q8NHW5 317 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 MYCBPAPQ8TBZ2 947 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 PLEKHO2Q8TD55 490 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 GAB3Q8WWW8 586 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 ATP2A3Q93084 1043 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 ELMO3Q96BJ8 720 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 SPATA17Q96L03 361 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 HHIPQ96QV1 700 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 FNBP1Q96RU3 617 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 SNX25Q9H3E2 840 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 SLC39A2Q9NP94 309 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 ARHGAP26Q9UNA1 814 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 SLC8A2Q9UPR5 921 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 SPAG17Q6Q759 2223 aa12.42□□□□□ -0.42
USP3-220ENST00000561381 EML5Q05BV3 1969 aa12.41□□□□□ -0.42
USP3-220ENST00000561381 CLDN5O00501 218 aa12.41□□□□□ -0.42
USP3-220ENST00000561381 SCAMP3O14828 347 aaKnown RBP12.41□□□□□ -0.42
USP3-220ENST00000561381 ATG13O75143 517 aa12.41□□□□□ -0.42
USP3-220ENST00000561381 RPP40O75818 363 aaKnown RBP12.41□□□□□ -0.42
USP3-220ENST00000561381 PTPN1P18031 435 aaKnown RBP12.41□□□□□ -0.42
USP3-220ENST00000561381 ANXA13P27216 316 aa12.41□□□□□ -0.42
USP3-220ENST00000561381 MYL6P60660 151 aa12.41□□□□□ -0.42
USP3-220ENST00000561381 AMPD2Q01433 879 aa12.41□□□□□ -0.42
USP3-220ENST00000561381 CUL4BQ13620 913 aa12.41□□□□□ -0.42
USP3-220ENST00000561381 PKP1Q13835 747 aa12.41□□□□□ -0.42
USP3-220ENST00000561381 SF3A2Q15428 464 aaKnown RBP12.41□□□□□ -0.42
USP3-220ENST00000561381 MAPRE1Q15691 268 aaKnown RBP12.41□□□□□ -0.42
USP3-220ENST00000561381 WDR72Q3MJ13 1102 aa12.41□□□□□ -0.42
USP3-220ENST00000561381 DENND5BQ6ZUT9 1274 aa12.41□□□□□ -0.42
USP3-220ENST00000561381 XXYLT1Q8NBI6 393 aa12.41□□□□□ -0.42
USP3-220ENST00000561381 NETO1Q8TDF5 533 aa12.41□□□□□ -0.42
USP3-220ENST00000561381 CD101Q93033 1021 aa12.41□□□□□ -0.42
USP3-220ENST00000561381 ZNF518BQ9C0D4 1074 aa12.41□□□□□ -0.42
USP3-220ENST00000561381 RNF38Q9H0F5 515 aa12.41□□□□□ -0.42
USP3-220ENST00000561381 ARRDC1-AS1Q9H2J1 176 aa12.41□□□□□ -0.42
USP3-220ENST00000561381 RXFP3Q9NSD7 469 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms