RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 TNFRSF10BO14763 440 aa23.05■■□□□ 1.28
SNX1-210ENST00000560260 THAP12O43422 761 aa23.05■■□□□ 1.28
SNX1-210ENST00000560260 RHOP08100 348 aa23.05■■□□□ 1.28
SNX1-210ENST00000560260 IL9P15248 144 aa23.05■■□□□ 1.28
SNX1-210ENST00000560260 ANXA13P27216 316 aa23.05■■□□□ 1.28
SNX1-210ENST00000560260 STAT1P42224 750 aa23.05■■□□□ 1.28
SNX1-210ENST00000560260 EPHA5P54756 1037 aa23.05■■□□□ 1.28
SNX1-210ENST00000560260 VEPH1Q14D04 833 aa23.05■■□□□ 1.28
SNX1-210ENST00000560260 PTCRAQ6ISU1 281 aaPredicted RBP23.05■■□□□ 1.28
SNX1-210ENST00000560260 DENND1BQ6P3S1 775 aa23.05■■□□□ 1.28
SNX1-210ENST00000560260 VSTM4Q8IW00 320 aa23.05■■□□□ 1.28
SNX1-210ENST00000560260 ANKRD52Q8NB46 1076 aa23.05■■□□□ 1.28
SNX1-210ENST00000560260 UBA3Q8TBC4 463 aa23.05■■□□□ 1.28
SNX1-210ENST00000560260 ZNF512Q96ME7 567 aaPredicted RBP23.05■■□□□ 1.28
SNX1-210ENST00000560260 IL21Q9HBE4 155 aa23.05■■□□□ 1.28
SNX1-210ENST00000560260 WDR6Q9NNW5 1121 aaKnown RBP23.05■■□□□ 1.28
SNX1-210ENST00000560260 ASB3Q9Y575 518 aa23.05■■□□□ 1.28
SNX1-210ENST00000560260 M0QYV0 167 aa23.04■■□□□ 1.28
SNX1-210ENST00000560260 MOSPD3O75425 235 aa23.04■■□□□ 1.28
SNX1-210ENST00000560260 GYPCP04921 128 aa23.04■■□□□ 1.28
SNX1-210ENST00000560260 TPM3P06753 285 aa23.04■■□□□ 1.28
SNX1-210ENST00000560260 MTHFRP42898 656 aa23.04■■□□□ 1.28
SNX1-210ENST00000560260 BCAT1P54687 386 aa23.04■■□□□ 1.28
SNX1-210ENST00000560260 PDE4CQ08493 712 aa23.04■■□□□ 1.28
SNX1-210ENST00000560260 CBX2Q14781 532 aaPredicted RBP23.04■■□□□ 1.28
SNX1-210ENST00000560260 PRSS36Q5K4E3 855 aa23.04■■□□□ 1.28
SNX1-210ENST00000560260 ATAT1Q5SQI0 421 aa23.04■■□□□ 1.28
SNX1-210ENST00000560260 CACNA2D4Q7Z3S7 1137 aa23.04■■□□□ 1.28
SNX1-210ENST00000560260 NOP9Q86U38 636 aaKnown RBP23.04■■□□□ 1.28
SNX1-210ENST00000560260 ELMOD1Q8N336 334 aa23.04■■□□□ 1.28
SNX1-210ENST00000560260 EPS8L1Q8TE68 723 aa23.04■■□□□ 1.28
SNX1-210ENST00000560260 DDX1Q92499 740 aaKnown RBP23.04■■□□□ 1.28
SNX1-210ENST00000560260 TCEAL4Q96EI5 215 aa23.04■■□□□ 1.28
SNX1-210ENST00000560260 RIPOR3Q96MK2 946 aa23.04■■□□□ 1.28
SNX1-210ENST00000560260 TRIM5Q9C035 493 aa23.04■■□□□ 1.28
SNX1-210ENST00000560260 NOCTQ9UK39 431 aaKnown RBP23.04■■□□□ 1.28
SNX1-210ENST00000560260 LRRC53A6NM62 1247 aa23.03■■□□□ 1.28
SNX1-210ENST00000560260 TADA3O75528 432 aa23.03■■□□□ 1.28
SNX1-210ENST00000560260 CYP11B1P15538 503 aa23.03■■□□□ 1.28
SNX1-210ENST00000560260 PTPN2P17706 415 aa23.03■■□□□ 1.28
SNX1-210ENST00000560260 SLC5A3P53794 718 aa23.03■■□□□ 1.28
SNX1-210ENST00000560260 PTK2Q05397 1052 aa23.03■■□□□ 1.28
SNX1-210ENST00000560260 STILQ15468 1287 aa23.03■■□□□ 1.28
SNX1-210ENST00000560260 SMAD2Q15796 467 aaKnown RBP23.03■■□□□ 1.28
SNX1-210ENST00000560260 PABPC1LQ4VXU2 614 aaKnown RBP23.03■■□□□ 1.28
SNX1-210ENST00000560260 POTEHQ6S545 545 aa23.03■■□□□ 1.28
SNX1-210ENST00000560260 ITIH5Q86UX2 942 aa23.03■■□□□ 1.28
SNX1-210ENST00000560260 ITFG1Q8TB96 612 aa23.03■■□□□ 1.28
SNX1-210ENST00000560260 SLC20A1Q8WUM9 679 aa23.03■■□□□ 1.28
SNX1-210ENST00000560260 SECISBP2LQ93073 1101 aaKnown RBP23.03■■□□□ 1.28
SNX1-210ENST00000560260 HESX1Q9UBX0 185 aa23.03■■□□□ 1.28
SNX1-210ENST00000560260 OBSL1O75147 1896 aa23.03■■□□□ 1.28
SNX1-210ENST00000560260 CSH1P0DML2 217 aa23.02■■□□□ 1.28
SNX1-210ENST00000560260 CSH2P0DML3 217 aa23.02■■□□□ 1.28
SNX1-210ENST00000560260 ZNF75DP51815 510 aa23.02■■□□□ 1.28
SNX1-210ENST00000560260 BST2Q10589 180 aaKnown RBP23.02■■□□□ 1.28
SNX1-210ENST00000560260 DENND5BQ6ZUT9 1274 aa23.02■■□□□ 1.28
SNX1-210ENST00000560260 PIGZQ86VD9 579 aa23.02■■□□□ 1.28
SNX1-210ENST00000560260 SCAMP5Q8TAC9 235 aa23.02■■□□□ 1.28
SNX1-210ENST00000560260 CEP295NLQ96MC4 621 aa23.02■■□□□ 1.28
SNX1-210ENST00000560260 TTLL2Q9BWV7 592 aa23.02■■□□□ 1.28
SNX1-210ENST00000560260 EDEM3Q9BZQ6 932 aa23.02■■□□□ 1.28
SNX1-210ENST00000560260 AVENQ9NQS1 362 aaPredicted RBP23.02■■□□□ 1.28
SNX1-210ENST00000560260 ASAH2Q9NR71 780 aa23.02■■□□□ 1.28
SNX1-210ENST00000560260 MAGED2Q9UNF1 606 aaPredicted RBP23.02■■□□□ 1.28
SNX1-210ENST00000560260 ZNF638Q14966 1978 aaKnown RBP23.02■■□□□ 1.28
SNX1-210ENST00000560260 A0A1W2PQJ5 194 aa23.01■■□□□ 1.27
SNX1-210ENST00000560260 XPO1O14980 1071 aaKnown RBP23.01■■□□□ 1.27
SNX1-210ENST00000560260 GABBR2O75899 941 aa23.01■■□□□ 1.27
SNX1-210ENST00000560260 MYL4P12829 197 aa23.01■■□□□ 1.27
SNX1-210ENST00000560260 GJA1P17302 382 aa23.01■■□□□ 1.27
SNX1-210ENST00000560260 BPIFB4P59827 614 aa23.01■■□□□ 1.27
SNX1-210ENST00000560260 TAF3Q5VWG9 929 aa23.01■■□□□ 1.27
SNX1-210ENST00000560260 SPECC1LQ69YQ0 1117 aa23.01■■□□□ 1.27
SNX1-210ENST00000560260 GAREM2Q75VX8 874 aa23.01■■□□□ 1.27
SNX1-210ENST00000560260 TMEM150AQ86TG1 271 aa23.01■■□□□ 1.27
SNX1-210ENST00000560260 OLIG1Q8TAK6 271 aa23.01■■□□□ 1.27
SNX1-210ENST00000560260 SHKBP1Q8TBC3 707 aa23.01■■□□□ 1.27
SNX1-210ENST00000560260 TRMT2BQ96GJ1 504 aaKnown RBP23.01■■□□□ 1.27
SNX1-210ENST00000560260 MYRFLQ96LU7 910 aa23.01■■□□□ 1.27
SNX1-210ENST00000560260 NECTIN4Q96NY8 510 aa23.01■■□□□ 1.27
SNX1-210ENST00000560260 NUP58Q9BVL2 599 aa23.01■■□□□ 1.27
SNX1-210ENST00000560260 PNPLA8Q9NP80 782 aa23.01■■□□□ 1.27
SNX1-210ENST00000560260 CYTH4Q9UIA0 394 aa23.01■■□□□ 1.27
SNX1-210ENST00000560260 MYO6Q9UM54 1294 aa23.01■■□□□ 1.27
SNX1-210ENST00000560260 PCDHGC3Q9UN70 934 aa23.01■■□□□ 1.27
SNX1-210ENST00000560260 MYO16Q9Y6X6 1858 aa23.01■■□□□ 1.27
SNX1-210ENST00000560260 MED7O43513 233 aa23■■□□□ 1.27
SNX1-210ENST00000560260 SETSIPP0DME0 302 aa23■■□□□ 1.27
SNX1-210ENST00000560260 CEBPBP17676 345 aa23■■□□□ 1.27
SNX1-210ENST00000560260 CHRNB2P17787 502 aa23■■□□□ 1.27
SNX1-210ENST00000560260 FSHRP23945 695 aa23■■□□□ 1.27
SNX1-210ENST00000560260 GPD2P43304 727 aa23■■□□□ 1.27
SNX1-210ENST00000560260 PLA2G4AP47712 749 aa23■■□□□ 1.27
SNX1-210ENST00000560260 PDE6CP51160 858 aa23■■□□□ 1.27
SNX1-210ENST00000560260 ARID5AQ03989 594 aa23■■□□□ 1.27
SNX1-210ENST00000560260 IFRD2Q12894 506 aaPredicted RBP23■■□□□ 1.27
SNX1-210ENST00000560260 MEA1Q16626 185 aa23■■□□□ 1.27
SNX1-210ENST00000560260 PDZD4Q76G19 769 aaPredicted RBP23■■□□□ 1.27
SNX1-210ENST00000560260 GET4Q7L5D6 327 aaPredicted RBP23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms