RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 WDR49Q8IV35 697 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 IQUBQ8NA54 791 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 SH3RF2Q8TEC5 729 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 OSCP1Q8WVF1 389 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 SCFD1Q8WVM8 642 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 EZH1Q92800 747 aaPredicted RBP12.44□□□□□ -0.42
USP3-214ENST00000559718 CCDC127Q96BQ5 260 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 PCED1BQ96HM7 432 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 ZNF396Q96N95 335 aaPredicted RBP12.44□□□□□ -0.42
USP3-214ENST00000559718 P2RY13Q9BPV8 354 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 C7orf25Q9BPX7 421 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 LRRC27Q9C0I9 530 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 GZF1Q9H116 711 aaPredicted RBP12.44□□□□□ -0.42
USP3-214ENST00000559718 BLZF1Q9H2G9 400 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 LINC00597Q9H2U6 94 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 CUEDC2Q9H467 287 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 DUS2Q9NX74 493 aaKnown RBP12.44□□□□□ -0.42
USP3-214ENST00000559718 MAGEC2Q9UBF1 373 aaPredicted RBP12.44□□□□□ -0.42
USP3-214ENST00000559718 R3HCC1Q9Y3T6 440 aaKnown RBP12.44□□□□□ -0.42
USP3-214ENST00000559718 PCDHGA4Q9Y5G9 962 aa12.44□□□□□ -0.42
USP3-214ENST00000559718 PTPRDP23468 1912 aa12.43□□□□□ -0.42
USP3-214ENST00000559718 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.43□□□□□ -0.42
USP3-214ENST00000559718 POLR2DO15514 142 aaKnown RBP12.43□□□□□ -0.42
USP3-214ENST00000559718 YEATS4O95619 227 aa12.43□□□□□ -0.42
USP3-214ENST00000559718 SDHBP21912 280 aa12.43□□□□□ -0.42
USP3-214ENST00000559718 GRIK1P39086 918 aa12.43□□□□□ -0.42
USP3-214ENST00000559718 CACNA2D1P54289 1103 aa12.43□□□□□ -0.42
USP3-214ENST00000559718 AMPD3Q01432 767 aa12.43□□□□□ -0.42
USP3-214ENST00000559718 CYP24A1Q07973 514 aa12.43□□□□□ -0.42
USP3-214ENST00000559718 EHHADHQ08426 723 aa12.43□□□□□ -0.42
USP3-214ENST00000559718 PSMD6Q15008 389 aa12.43□□□□□ -0.42
USP3-214ENST00000559718 CCDC6Q16204 474 aa12.43□□□□□ -0.42
USP3-214ENST00000559718 EML3Q32P44 896 aa12.43□□□□□ -0.42
USP3-214ENST00000559718 MDH1BQ5I0G3 518 aa12.43□□□□□ -0.42
USP3-214ENST00000559718 C4orf50Q6ZRC1 276 aa12.43□□□□□ -0.42
USP3-214ENST00000559718 PRR23CQ6ZRP0 262 aa12.43□□□□□ -0.42
USP3-214ENST00000559718 ZNF516Q92618 1163 aa12.43□□□□□ -0.42
USP3-214ENST00000559718 CGRRF1Q99675 332 aa12.43□□□□□ -0.42
USP3-214ENST00000559718 RTKNQ9BST9 563 aa12.43□□□□□ -0.42
USP3-214ENST00000559718 DPEP3Q9H4B8 488 aa12.43□□□□□ -0.42
USP3-214ENST00000559718 KIAA1586Q9HCI6 787 aa12.43□□□□□ -0.42
USP3-214ENST00000559718 TMEM30AQ9NV96 361 aa12.43□□□□□ -0.42
USP3-214ENST00000559718 ANTXRLA6NF34 631 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 F8VP50 259 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 AXIN1O15169 862 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 LRP3O75074 770 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 HDCP19113 662 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 TNNI1P19237 187 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 DRD1P21728 446 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 GNL1P36915 607 aaPredicted RBP12.42□□□□□ -0.42
USP3-214ENST00000559718 AFMP43652 599 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 IFNAR2P48551 515 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 CASP4P49662 377 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 KCNB1Q14721 858 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 CSRP2Q16527 193 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 VSTM1Q6UX27 236 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 UNC13DQ70J99 1090 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 HS2ST1Q7LGA3 356 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 KBTBD6Q86V97 674 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 GRAMD1CQ8IYS0 662 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 CPA6Q8N4T0 437 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 FSIP1Q8NA03 581 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 OR6B3Q8NGW1 331 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 RPLP0P6Q8NHW5 317 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 MYCBPAPQ8TBZ2 947 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 PLEKHO2Q8TD55 490 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 GAB3Q8WWW8 586 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 ATP2A3Q93084 1043 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 ELMO3Q96BJ8 720 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 SPATA17Q96L03 361 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 HHIPQ96QV1 700 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 FNBP1Q96RU3 617 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 SNX25Q9H3E2 840 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 SLC39A2Q9NP94 309 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 ARHGAP26Q9UNA1 814 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 SLC8A2Q9UPR5 921 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 SPAG17Q6Q759 2223 aa12.42□□□□□ -0.42
USP3-214ENST00000559718 EML5Q05BV3 1969 aa12.41□□□□□ -0.42
USP3-214ENST00000559718 CLDN5O00501 218 aa12.41□□□□□ -0.42
USP3-214ENST00000559718 SCAMP3O14828 347 aaKnown RBP12.41□□□□□ -0.42
USP3-214ENST00000559718 ATG13O75143 517 aa12.41□□□□□ -0.42
USP3-214ENST00000559718 RPP40O75818 363 aaKnown RBP12.41□□□□□ -0.42
USP3-214ENST00000559718 PTPN1P18031 435 aaKnown RBP12.41□□□□□ -0.42
USP3-214ENST00000559718 ANXA13P27216 316 aa12.41□□□□□ -0.42
USP3-214ENST00000559718 MYL6P60660 151 aa12.41□□□□□ -0.42
USP3-214ENST00000559718 AMPD2Q01433 879 aa12.41□□□□□ -0.42
USP3-214ENST00000559718 CUL4BQ13620 913 aa12.41□□□□□ -0.42
USP3-214ENST00000559718 PKP1Q13835 747 aa12.41□□□□□ -0.42
USP3-214ENST00000559718 SF3A2Q15428 464 aaKnown RBP12.41□□□□□ -0.42
USP3-214ENST00000559718 MAPRE1Q15691 268 aaKnown RBP12.41□□□□□ -0.42
USP3-214ENST00000559718 WDR72Q3MJ13 1102 aa12.41□□□□□ -0.42
USP3-214ENST00000559718 DENND5BQ6ZUT9 1274 aa12.41□□□□□ -0.42
USP3-214ENST00000559718 XXYLT1Q8NBI6 393 aa12.41□□□□□ -0.42
USP3-214ENST00000559718 NETO1Q8TDF5 533 aa12.41□□□□□ -0.42
USP3-214ENST00000559718 CD101Q93033 1021 aa12.41□□□□□ -0.42
USP3-214ENST00000559718 ZNF518BQ9C0D4 1074 aa12.41□□□□□ -0.42
USP3-214ENST00000559718 RNF38Q9H0F5 515 aa12.41□□□□□ -0.42
USP3-214ENST00000559718 ARRDC1-AS1Q9H2J1 176 aa12.41□□□□□ -0.42
USP3-214ENST00000559718 RXFP3Q9NSD7 469 aa12.41□□□□□ -0.42
USP3-214ENST00000559718 NXF1Q9UBU9 619 aaKnown RBP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms