RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	TMEM79	Q9BSE2	394 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	MRPL40	Q9NQ50	206 aa	Known RBP	5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	LRRC4B	Q9NT99	713 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	ECM29	Q5VYK3	1845 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	KAT6B	Q8WYB5	2073 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	TPP1	O14773	563 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	LIAS	O43766	372 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	FAM155B	O75949	473 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	FAM58BP	P0C7Q3	252 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	HNRNPH3	P31942	346 aa	Known RBP	5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	SREBF1	P36956	1147 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	ELK3	P41970	407 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	ALDH1A3	P47895	512 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	ADAR	P55265	1226 aa	Known RBP	5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	PRKCE	Q02156	737 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	MCL1	Q07820	350 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	R3HDM1	Q15032	1099 aa	Known RBP	5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	COBLL1	Q53SF7	1204 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	TEDDM1	Q5T9Z0	273 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	N4BP2L1	Q5TBK1	243 aa	Predicted RBP	5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	BNC2	Q6ZN30	1099 aa	Predicted RBP	5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	OTOA	Q7RTW8	1153 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	PIGW	Q7Z7B1	504 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	PPHLN1	Q8NEY8	458 aa	Known RBP	5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	LRRC15	Q8TF66	581 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	SRPK1	Q96SB4	655 aa	Known RBP	5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	CCDC134	Q9H6E4	229 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	AGO4	Q9HCK5	861 aa	Known RBP	5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	SLCO1B3	Q9NPD5	702 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	SLC24A2	Q9UI40	661 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	MID2	Q9UJV3	735 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	N4BP2	Q86UW6	1770 aa	Predicted RBP	5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	C21orf2	O43822	256 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	PML	P29590	882 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	MTMR2	Q13614	643 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	INPP5A	Q14642	412 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005		Q3C1V9	767 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	PPP1R15B	Q5SWA1	713 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	TTC33	Q6PID6	262 aa	Predicted RBP	5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	LPCAT2	Q7L5N7	544 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	SATL1	Q86VE3	508 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	MYLK4	Q86YV6	388 aa	Predicted RBP	5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	OR6Y1	Q8NGX8	325 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	EXD1	Q8NHP7	514 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	MTMR12	Q9C0I1	747 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	LRMDA	Q9H2I8	198 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	JPH1	Q9HDC5	661 aa	Predicted RBP	5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	SAR1A	Q9NR31	198 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	FBXO6	Q9NRD1	293 aa	Predicted RBP	5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	IARS2	Q9NSE4	1012 aa	Known RBP	5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	PAIP2B	Q9ULR5	123 aa	Known RBP	5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	ANGPTL3	Q9Y5C1	460 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	RGPD5	Q99666	1765 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	MROH7	Q68CQ1	1323 aa		5.18	□□□□□ -1.58
SYNE2-223	ENST00000557005	PGM3	O95394	542 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	IL10	P22301	178 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	GLRB	P48167	497 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	HSPA13	P48723	471 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	AMHR2	Q16671	573 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	SLC44A4	Q53GD3	710 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	ARSH	Q5FYA8	562 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	CPNE8	Q86YQ8	564 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	FAM13C	Q8NE31	585 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	FAM81A	Q8TBF8	368 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	ASAP3	Q8TDY4	903 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	GFM2	Q969S9	779 aa	Known RBP	5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	ATP6V1E2	Q96A05	226 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	C17orf80	Q9BSJ5	609 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	CEP41	Q9BYV8	373 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	FAM192A	Q9GZU8	254 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	PAK5	Q9P286	719 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	STX18	Q9P2W9	335 aa	Known RBP	5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	POLL	Q9UGP5	575 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	DCDC2	Q9UHG0	476 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	PCDHB2	Q9Y5E7	798 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	PCDHA11	Q9Y5I1	949 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	SNX13	Q9Y5W8	968 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	COL5A2	P05997	1499 aa	Predicted RBP	5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	EEF2K	O00418	725 aa	Known RBP	5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	AVIL	O75366	819 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	APBA3	O96018	575 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	OAT	P04181	439 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	AMPD1	P23109	780 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	FOLH1	Q04609	750 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	USP10	Q14694	798 aa	Known RBP	5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	KCTD21	Q4G0X4	260 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	LLGL2	Q6P1M3	1020 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	FAM43B	Q6ZT52	329 aa	Predicted RBP	5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	EIF1AD	Q8N9N8	165 aa	Known RBP	5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	MCPH1	Q8NEM0	835 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	ZNF555	Q8NEP9	628 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	RNF217	Q8TC41	542 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	SKA2	Q8WVK7	121 aa	Predicted RBP	5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	CPB2	Q96IY4	423 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	PHF12	Q96QT6	1004 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	FOXP3	Q9BZS1	431 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	XPNPEP3	Q9NQH7	507 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	GRID1	Q9ULK0	1009 aa		5.17	□□□□□ -1.58

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