RNA–Protein interactions for RNA: ENST00000554928.1

SYNE2-214, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 1,048 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-214ENST00000554928 SCAMP5Q8TAC9 235 aa13.11□□□□□ -0.31
SYNE2-214ENST00000554928 RIN3Q8TB24 985 aa13.11□□□□□ -0.31
SYNE2-214ENST00000554928 TFAP2BQ92481 460 aa13.11□□□□□ -0.31
SYNE2-214ENST00000554928 EDAQ92838 391 aa13.11□□□□□ -0.31
SYNE2-214ENST00000554928 JAKMIP2Q96AA8 810 aa13.11□□□□□ -0.31
SYNE2-214ENST00000554928 TMEM176AQ96HP8 235 aa13.11□□□□□ -0.31
SYNE2-214ENST00000554928 SPATA17Q96L03 361 aa13.11□□□□□ -0.31
SYNE2-214ENST00000554928 MYRFLQ96LU7 910 aa13.11□□□□□ -0.31
SYNE2-214ENST00000554928 HEXIM2Q96MH2 286 aaKnown RBP13.11□□□□□ -0.31
SYNE2-214ENST00000554928 SLC22A12Q96S37 553 aa13.11□□□□□ -0.31
SYNE2-214ENST00000554928 HNRNPABQ99729 332 aaKnown RBP13.11□□□□□ -0.31
SYNE2-214ENST00000554928 TUBGCP2Q9BSJ2 902 aa13.11□□□□□ -0.31
SYNE2-214ENST00000554928 SLITRK6Q9H5Y7 841 aa13.11□□□□□ -0.31
SYNE2-214ENST00000554928 GDE1Q9NZC3 331 aa13.11□□□□□ -0.31
SYNE2-214ENST00000554928 IGSF9Q9P2J2 1179 aa13.11□□□□□ -0.31
SYNE2-214ENST00000554928 COL4A3Q01955 1670 aa13.11□□□□□ -0.31
SYNE2-214ENST00000554928 TECTAO75443 2155 aa13.11□□□□□ -0.31
SYNE2-214ENST00000554928 MYO10Q9HD67 2058 aa13.11□□□□□ -0.31
SYNE2-214ENST00000554928 SYCE3A1L190 88 aa13.1□□□□□ -0.31
SYNE2-214ENST00000554928 C2orf78A6NCI8 922 aa13.1□□□□□ -0.31
SYNE2-214ENST00000554928 TULP2O00295 520 aa13.1□□□□□ -0.31
SYNE2-214ENST00000554928 TRIM66O15016 1216 aa13.1□□□□□ -0.31
SYNE2-214ENST00000554928 ATMINO43313 823 aaPredicted RBP13.1□□□□□ -0.31
SYNE2-214ENST00000554928 PRKCSHP14314 528 aaPredicted RBP13.1□□□□□ -0.31
SYNE2-214ENST00000554928 PON1P27169 355 aa13.1□□□□□ -0.31
SYNE2-214ENST00000554928 ANXA13P27216 316 aa13.1□□□□□ -0.31
SYNE2-214ENST00000554928 GPC5P78333 572 aa13.1□□□□□ -0.31
SYNE2-214ENST00000554928 KCNMA1Q12791 1236 aa13.1□□□□□ -0.31
SYNE2-214ENST00000554928 GRM2Q14416 872 aa13.1□□□□□ -0.31
SYNE2-214ENST00000554928 KRT31Q15323 416 aa13.1□□□□□ -0.31
SYNE2-214ENST00000554928 TRIM65Q6PJ69 517 aa13.1□□□□□ -0.31
SYNE2-214ENST00000554928 DENND5BQ6ZUT9 1274 aa13.1□□□□□ -0.31
SYNE2-214ENST00000554928 AOPEPQ8N6M6 819 aa13.1□□□□□ -0.31
SYNE2-214ENST00000554928 MAB21L3Q8N8X9 362 aa13.1□□□□□ -0.31
SYNE2-214ENST00000554928 SMARCD2Q92925 531 aa13.1□□□□□ -0.31
SYNE2-214ENST00000554928 ASIC4Q96FT7 647 aa13.1□□□□□ -0.31
SYNE2-214ENST00000554928 TRMT2BQ96GJ1 504 aaKnown RBP13.1□□□□□ -0.31
SYNE2-214ENST00000554928 SMARCD1Q96GM5 515 aa13.1□□□□□ -0.31
SYNE2-214ENST00000554928 FAXDC2Q96IV6 333 aa13.1□□□□□ -0.31
SYNE2-214ENST00000554928 TTLL2Q9BWV7 592 aa13.1□□□□□ -0.31
SYNE2-214ENST00000554928 NDST4Q9H3R1 872 aa13.1□□□□□ -0.31
SYNE2-214ENST00000554928 CSNK1G1Q9HCP0 422 aa13.1□□□□□ -0.31
SYNE2-214ENST00000554928 ACP6Q9NPH0 428 aa13.1□□□□□ -0.31
SYNE2-214ENST00000554928 DUSP12Q9UNI6 340 aa13.1□□□□□ -0.31
SYNE2-214ENST00000554928 PCDHB4Q9Y5E5 795 aa13.1□□□□□ -0.31
SYNE2-214ENST00000554928 ZFP37Q9Y6Q3 630 aaPredicted RBP13.1□□□□□ -0.31
SYNE2-214ENST00000554928 CFHP08603 1231 aa13.09□□□□□ -0.31
SYNE2-214ENST00000554928 ATP1A3P13637 1013 aa13.09□□□□□ -0.31
SYNE2-214ENST00000554928 ALADP13716 330 aa13.09□□□□□ -0.31
SYNE2-214ENST00000554928 CDC25CP30307 473 aa13.09□□□□□ -0.31
SYNE2-214ENST00000554928 KLK7P49862 253 aa13.09□□□□□ -0.31
SYNE2-214ENST00000554928 ZNF132P52740 706 aa13.09□□□□□ -0.31
SYNE2-214ENST00000554928 SLC5A3P53794 718 aa13.09□□□□□ -0.31
SYNE2-214ENST00000554928 MYL5Q02045 173 aa13.09□□□□□ -0.31
SYNE2-214ENST00000554928 TAF10Q12962 218 aa13.09□□□□□ -0.31
SYNE2-214ENST00000554928 EXOC3L4Q17RC7 722 aa13.09□□□□□ -0.31
SYNE2-214ENST00000554928 TMEM270Q6UE05 265 aa13.09□□□□□ -0.31
SYNE2-214ENST00000554928 VITQ6UXI7 678 aa13.09□□□□□ -0.31
SYNE2-214ENST00000554928 TRIM67Q6ZTA4 783 aa13.09□□□□□ -0.31
SYNE2-214ENST00000554928 APTXQ7Z2E3 356 aaKnown RBP13.09□□□□□ -0.31
SYNE2-214ENST00000554928 TTC30AQ86WT1 665 aa13.09□□□□□ -0.31
SYNE2-214ENST00000554928 ARID3BQ8IVW6 561 aaPredicted RBP13.09□□□□□ -0.31
SYNE2-214ENST00000554928 FAM114A1Q8IWE2 563 aa13.09□□□□□ -0.31
SYNE2-214ENST00000554928 DHX40Q8IX18 779 aaKnown RBP13.09□□□□□ -0.31
SYNE2-214ENST00000554928 CYP2S1Q96SQ9 504 aa13.09□□□□□ -0.31
SYNE2-214ENST00000554928 VPS16Q9H269 839 aa13.09□□□□□ -0.31
SYNE2-214ENST00000554928 TASP1Q9H6P5 420 aa13.09□□□□□ -0.31
SYNE2-214ENST00000554928 UBE2TQ9NPD8 197 aaPredicted RBP13.09□□□□□ -0.31
SYNE2-214ENST00000554928 DMAP1Q9NPF5 467 aaPredicted RBP13.09□□□□□ -0.31
SYNE2-214ENST00000554928 CCL26Q9Y258 94 aa13.09□□□□□ -0.31
SYNE2-214ENST00000554928 TMEM221A6NGB7 291 aa13.08□□□□□ -0.32
SYNE2-214ENST00000554928 HEPACAM2A8MVW5 462 aa13.08□□□□□ -0.32
SYNE2-214ENST00000554928 BECN2A8MW95 431 aa13.08□□□□□ -0.32
SYNE2-214ENST00000554928 M0R296 226 aa13.08□□□□□ -0.32
SYNE2-214ENST00000554928 ECI2O75521 394 aa13.08□□□□□ -0.32
SYNE2-214ENST00000554928 FAM200BP0CF97 657 aa13.08□□□□□ -0.32
SYNE2-214ENST00000554928 PNMA6AP0CW24 399 aaPredicted RBP13.08□□□□□ -0.32
SYNE2-214ENST00000554928 CD19P15391 556 aa13.08□□□□□ -0.32
SYNE2-214ENST00000554928 ZNF18P17022 549 aa13.08□□□□□ -0.32
SYNE2-214ENST00000554928 TBXAS1P24557 533 aaPredicted RBP13.08□□□□□ -0.32
SYNE2-214ENST00000554928 BRD2P25440 801 aaKnown RBP13.08□□□□□ -0.32
SYNE2-214ENST00000554928 GCNT1Q02742 428 aa13.08□□□□□ -0.32
SYNE2-214ENST00000554928 SIGLEC14Q08ET2 396 aa13.08□□□□□ -0.32
SYNE2-214ENST00000554928 CETN1Q12798 172 aa13.08□□□□□ -0.32
SYNE2-214ENST00000554928 ARHGAP44Q17R89 818 aa13.08□□□□□ -0.32
SYNE2-214ENST00000554928 GOLGA7BQ2TAP0 167 aa13.08□□□□□ -0.32
SYNE2-214ENST00000554928 ARHGAP17Q68EM7 881 aa13.08□□□□□ -0.32
SYNE2-214ENST00000554928 GBP6Q6ZN66 633 aa13.08□□□□□ -0.32
SYNE2-214ENST00000554928 MTSS1LQ765P7 747 aa13.08□□□□□ -0.32
SYNE2-214ENST00000554928 NUP93Q8N1F7 819 aa13.08□□□□□ -0.32
SYNE2-214ENST00000554928 RBBP8NLQ8NC74 664 aaPredicted RBP13.08□□□□□ -0.32
SYNE2-214ENST00000554928 UBA3Q8TBC4 463 aa13.08□□□□□ -0.32
SYNE2-214ENST00000554928 ELSPBP1Q96BH3 223 aa13.08□□□□□ -0.32
SYNE2-214ENST00000554928 TRPC7Q9HCX4 862 aa13.08□□□□□ -0.32
SYNE2-214ENST00000554928 IL37Q9NZH6 218 aa13.08□□□□□ -0.32
SYNE2-214ENST00000554928 GMIPQ9P107 970 aa13.08□□□□□ -0.32
SYNE2-214ENST00000554928 ATP8B3O60423 1300 aa13.08□□□□□ -0.32
SYNE2-214ENST00000554928 GTPBP10A4D1E9 387 aaKnown RBP13.07□□□□□ -0.32
SYNE2-214ENST00000554928 KRBA1A5PL33 1030 aa13.07□□□□□ -0.32
SYNE2-214ENST00000554928 ZNF840PA6NDX5 716 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms