RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 SLC44A1Q8WWI5 657 aa18.35■□□□□ 0.53
SYNE3-202ENST00000553340 LBHD1Q9BQE6 289 aaPredicted RBP18.35■□□□□ 0.53
SYNE3-202ENST00000553340 SLC9A2Q9UBY0 812 aa18.35■□□□□ 0.53
SYNE3-202ENST00000553340 STRIP2Q9ULQ0 834 aa18.35■□□□□ 0.53
SYNE3-202ENST00000553340 CNTNAP2Q9UHC6 1331 aa18.35■□□□□ 0.53
SYNE3-202ENST00000553340 PYGBP11216 843 aa18.35■□□□□ 0.53
SYNE3-202ENST00000553340 EIF4BP23588 611 aaKnown RBP18.35■□□□□ 0.53
SYNE3-202ENST00000553340 ELK3P41970 407 aa18.35■□□□□ 0.53
SYNE3-202ENST00000553340 SLC25A11Q02978 314 aaKnown RBP18.35■□□□□ 0.53
SYNE3-202ENST00000553340 TTC7BQ86TV6 843 aa18.35■□□□□ 0.53
SYNE3-202ENST00000553340 UNC45BQ8IWX7 931 aa18.35■□□□□ 0.53
SYNE3-202ENST00000553340 TARS2Q9BW92 718 aaKnown RBP18.35■□□□□ 0.53
SYNE3-202ENST00000553340 IQCGQ9H095 443 aaKnown RBP18.35■□□□□ 0.53
SYNE3-202ENST00000553340 A0A0B4J269 797 aa18.34■□□□□ 0.53
SYNE3-202ENST00000553340 TCRBV9S1A1TA0A576 114 aa18.34■□□□□ 0.53
SYNE3-202ENST00000553340 C2orf71A6NGG8 1288 aa18.34■□□□□ 0.53
SYNE3-202ENST00000553340 LRRIQ4A6NIV6 560 aa18.34■□□□□ 0.53
SYNE3-202ENST00000553340 KLF11O14901 512 aa18.34■□□□□ 0.53
SYNE3-202ENST00000553340 ASS1P00966 412 aaKnown RBP18.34■□□□□ 0.53
SYNE3-202ENST00000553340 NR3C2P08235 984 aa18.34■□□□□ 0.53
SYNE3-202ENST00000553340 KCNA2P16389 499 aa18.34■□□□□ 0.53
SYNE3-202ENST00000553340 KDELR1P24390 212 aa18.34■□□□□ 0.53
SYNE3-202ENST00000553340 HMGB2P26583 209 aaKnown RBP18.34■□□□□ 0.53
SYNE3-202ENST00000553340 SERPINB4P48594 390 aa18.34■□□□□ 0.53
SYNE3-202ENST00000553340 FAAP100Q0VG06 881 aa18.34■□□□□ 0.53
SYNE3-202ENST00000553340 THOC5Q13769 683 aaKnown RBP18.34■□□□□ 0.53
SYNE3-202ENST00000553340 KBTBD12Q3ZCT8 623 aa18.34■□□□□ 0.53
SYNE3-202ENST00000553340 ZNF394Q53GI3 561 aa18.34■□□□□ 0.53
SYNE3-202ENST00000553340 KCNT1Q5JUK3 1230 aa18.34■□□□□ 0.53
SYNE3-202ENST00000553340 WDTC1Q8N5D0 677 aa18.34■□□□□ 0.53
SYNE3-202ENST00000553340 TMEM143Q96AN5 459 aa18.34■□□□□ 0.53
SYNE3-202ENST00000553340 JPH1Q9HDC5 661 aaPredicted RBP18.34■□□□□ 0.53
SYNE3-202ENST00000553340 CNTN3Q9P232 1028 aa18.34■□□□□ 0.53
SYNE3-202ENST00000553340 FAM237BA0A1B0GVD1 139 aa18.34■□□□□ 0.53
SYNE3-202ENST00000553340 RFC1P35251 1148 aaPredicted RBP18.34■□□□□ 0.53
SYNE3-202ENST00000553340 BAATQ14032 418 aaPredicted RBP18.34■□□□□ 0.53
SYNE3-202ENST00000553340 RNF220Q5VTB9 566 aa18.34■□□□□ 0.53
SYNE3-202ENST00000553340 RSBN1LQ6PCB5 846 aaPredicted RBP18.34■□□□□ 0.53
SYNE3-202ENST00000553340 SH2D5Q6ZV89 423 aa18.34■□□□□ 0.53
SYNE3-202ENST00000553340 MFN1Q8IWA4 741 aa18.34■□□□□ 0.53
SYNE3-202ENST00000553340 FAM71DQ8N9W8 422 aa18.34■□□□□ 0.53
SYNE3-202ENST00000553340 CCDC110Q8TBZ0 833 aa18.34■□□□□ 0.53
SYNE3-202ENST00000553340 NMUR2Q9GZQ4 415 aa18.34■□□□□ 0.53
SYNE3-202ENST00000553340 FBXO40Q9UH90 709 aa18.34■□□□□ 0.53
SYNE3-202ENST00000553340 C2CD2Q9Y426 696 aa18.34■□□□□ 0.53
SYNE3-202ENST00000553340 MAP3K13O43283 966 aa18.33■□□□□ 0.53
SYNE3-202ENST00000553340 LRCH4O75427 683 aa18.33■□□□□ 0.53
SYNE3-202ENST00000553340 CST3P01034 146 aaPredicted RBP18.33■□□□□ 0.53
SYNE3-202ENST00000553340 CDH5P33151 784 aaPredicted RBP18.33■□□□□ 0.53
SYNE3-202ENST00000553340 RAP1GDS1P52306 607 aa18.33■□□□□ 0.53
SYNE3-202ENST00000553340 ROR2Q01974 943 aaKnown RBP18.33■□□□□ 0.53
SYNE3-202ENST00000553340 XKR3Q5GH77 459 aa18.33■□□□□ 0.53
SYNE3-202ENST00000553340 FKBP1CQ5VVH2 108 aa18.33■□□□□ 0.53
SYNE3-202ENST00000553340 TMPRSS6Q8IU80 811 aa18.33■□□□□ 0.53
SYNE3-202ENST00000553340 IGDCC3Q8IVU1 814 aa18.33■□□□□ 0.53
SYNE3-202ENST00000553340 ZNF184Q99676 751 aaPredicted RBP18.33■□□□□ 0.53
SYNE3-202ENST00000553340 PPP1R12CQ9BZL4 782 aa18.33■□□□□ 0.53
SYNE3-202ENST00000553340 CISHQ9NSE2 258 aa18.33■□□□□ 0.53
SYNE3-202ENST00000553340 ARMCX1Q9P291 453 aa18.33■□□□□ 0.53
SYNE3-202ENST00000553340 MAGEA13PA6NCF6 341 aa18.33■□□□□ 0.52
SYNE3-202ENST00000553340 B2RBV5 119 aa18.33■□□□□ 0.52
SYNE3-202ENST00000553340 KBTBD13C9JR72 458 aa18.33■□□□□ 0.52
SYNE3-202ENST00000553340 COPEO14579 308 aa18.33■□□□□ 0.52
SYNE3-202ENST00000553340 MAGEC1O60732 1142 aa18.33■□□□□ 0.52
SYNE3-202ENST00000553340 SPAG6O75602 509 aa18.33■□□□□ 0.52
SYNE3-202ENST00000553340 SNUPNO95149 360 aaKnown RBP18.33■□□□□ 0.52
SYNE3-202ENST00000553340 KRT3P12035 628 aa18.33■□□□□ 0.52
SYNE3-202ENST00000553340 KCNA3P22001 575 aa18.33■□□□□ 0.52
SYNE3-202ENST00000553340 IL1R2P27930 398 aa18.33■□□□□ 0.52
SYNE3-202ENST00000553340 NAMPTP43490 491 aa18.33■□□□□ 0.52
SYNE3-202ENST00000553340 EIF3EP60228 445 aaKnown RBP18.33■□□□□ 0.52
SYNE3-202ENST00000553340 YWHAGP61981 247 aaKnown RBP eCLIP18.33■□□□□ 0.52
SYNE3-202ENST00000553340 DPYSL3Q14195 570 aa18.33■□□□□ 0.52
SYNE3-202ENST00000553340 TAZQ16635 292 aa18.33■□□□□ 0.52
SYNE3-202ENST00000553340 CWF19L1Q69YN2 538 aaKnown RBP18.33■□□□□ 0.52
SYNE3-202ENST00000553340 SCARA3Q6AZY7 606 aa18.33■□□□□ 0.52
SYNE3-202ENST00000553340 GALNT15Q8N3T1 639 aa18.33■□□□□ 0.52
SYNE3-202ENST00000553340 KCNN1Q92952 543 aa18.33■□□□□ 0.52
SYNE3-202ENST00000553340 KCNK4Q9NYG8 393 aa18.33■□□□□ 0.52
SYNE3-202ENST00000553340 ANGPTL2Q9UKU9 493 aa18.33■□□□□ 0.52
SYNE3-202ENST00000553340 PCDHGC3Q9UN70 934 aa18.33■□□□□ 0.52
SYNE3-202ENST00000553340 TELO2Q9Y4R8 837 aa18.33■□□□□ 0.52
SYNE3-202ENST00000553340 F8W8V4 182 aa18.32■□□□□ 0.52
SYNE3-202ENST00000553340 I3L4J1 428 aa18.32■□□□□ 0.52
SYNE3-202ENST00000553340 MCF2LO15068 1137 aa18.32■□□□□ 0.52
SYNE3-202ENST00000553340 PLSCR1O15162 318 aa18.32■□□□□ 0.52
SYNE3-202ENST00000553340 HARSP12081 509 aaKnown RBP18.32■□□□□ 0.52
SYNE3-202ENST00000553340 POLR2BP30876 1174 aaKnown RBP18.32■□□□□ 0.52
SYNE3-202ENST00000553340 AP3M2P53677 418 aa18.32■□□□□ 0.52
SYNE3-202ENST00000553340 ACTR2P61160 394 aa18.32■□□□□ 0.52
SYNE3-202ENST00000553340 SEZ6Q53EL9 994 aa18.32■□□□□ 0.52
SYNE3-202ENST00000553340 RFX6Q8HWS3 928 aa18.32■□□□□ 0.52
SYNE3-202ENST00000553340 IFT43Q96FT9 208 aa18.32■□□□□ 0.52
SYNE3-202ENST00000553340 FAM161BQ96MY7 647 aa18.32■□□□□ 0.52
SYNE3-202ENST00000553340 APOC4-APOC2K7ER74 178 aa18.32■□□□□ 0.52
SYNE3-202ENST00000553340 APOC2P02655 101 aa18.32■□□□□ 0.52
SYNE3-202ENST00000553340 WDR78Q5VTH9 848 aa18.32■□□□□ 0.52
SYNE3-202ENST00000553340 FAM83AQ86UY5 434 aa18.32■□□□□ 0.52
SYNE3-202ENST00000553340 ALYREFQ86V81 257 aaKnown RBP18.32■□□□□ 0.52
SYNE3-202ENST00000553340 TRIM42Q8IWZ5 723 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms