RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	PHYKPL	Q8IUZ5	450 aa		4.57	□□□□□ -1.68
USP44-208	ENST00000552440	RNF168	Q8IYW5	571 aa	Predicted RBP	4.57	□□□□□ -1.68
USP44-208	ENST00000552440	IPMK	Q8NFU5	416 aa		4.57	□□□□□ -1.68
USP44-208	ENST00000552440	AFG1L	Q8WV93	481 aa		4.57	□□□□□ -1.68
USP44-208	ENST00000552440	AUTS2	Q8WXX7	1259 aa		4.57	□□□□□ -1.68
USP44-208	ENST00000552440	EID2B	Q96D98	161 aa		4.57	□□□□□ -1.68
USP44-208	ENST00000552440	RAX2	Q96IS3	184 aa		4.57	□□□□□ -1.68
USP44-208	ENST00000552440	NOX5	Q96PH1	765 aa		4.57	□□□□□ -1.68
USP44-208	ENST00000552440	RBM15	Q96T37	977 aa	Known RBP eCLIP	4.57	□□□□□ -1.68
USP44-208	ENST00000552440	C11orf84	Q9BUA3	381 aa	Predicted RBP	4.57	□□□□□ -1.68
USP44-208	ENST00000552440	DDX23	Q9BUQ8	820 aa	Known RBP	4.57	□□□□□ -1.68
USP44-208	ENST00000552440	RABEP2	Q9H5N1	569 aa		4.57	□□□□□ -1.68
USP44-208	ENST00000552440	RXFP3	Q9NSD7	469 aa		4.57	□□□□□ -1.68
USP44-208	ENST00000552440	TBCCD1	Q9NVR7	557 aa		4.57	□□□□□ -1.68
USP44-208	ENST00000552440	SPATA6	Q9NWH7	488 aa	Predicted RBP	4.57	□□□□□ -1.68
USP44-208	ENST00000552440	IGSF9	Q9P2J2	1179 aa		4.57	□□□□□ -1.68
USP44-208	ENST00000552440	CPNE7	Q9UBL6	633 aa		4.57	□□□□□ -1.68
USP44-208	ENST00000552440	TMPRSS11E	Q9UL52	423 aa		4.57	□□□□□ -1.68
USP44-208	ENST00000552440	MROH6	A6NGR9	719 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	HMX3	A6NHT5	357 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	AGAP14	A8MT82	685 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	SLC27A2	O14975	620 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	FOXP2	O15409	715 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	FMO6P	O60774	539 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	SOCS5	O75159	536 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	KIT	P10721	976 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	COG2	Q14746	738 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	RAB30	Q15771	203 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	ADIPOQ	Q15848	244 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	BTBD8	Q5XKL5	378 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	STEAP3	Q658P3	488 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	MCTP2	Q6DN12	878 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	NFRKB	Q6P4R8	1299 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	IYD	Q6PHW0	289 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	SHQ1	Q6PI26	577 aa	Known RBP	4.56	□□□□□ -1.68
USP44-208	ENST00000552440	FBXO38	Q6PIJ6	1188 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	BBS12	Q6ZW61	710 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	SZRD1	Q7Z422	152 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	4.56	□□□□□ -1.68
USP44-208	ENST00000552440	ZER1	Q7Z7L7	766 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	RAB11FIP4	Q86YS3	637 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	THNSL1	Q8IYQ7	743 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	SRBD1	Q8N5C6	995 aa	Known RBP	4.56	□□□□□ -1.68
USP44-208	ENST00000552440	TMCO5A	Q8N6Q1	288 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	BRSK1	Q8TDC3	778 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	PIGO	Q8TEQ8	1089 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	TSPEAR	Q8WU66	669 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	FOXRED1	Q96CU9	486 aa	Predicted RBP	4.56	□□□□□ -1.68
USP44-208	ENST00000552440	FAM120B	Q96EK7	910 aa	Known RBP	4.56	□□□□□ -1.68
USP44-208	ENST00000552440	BICD1	Q96G01	975 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	CALML4	Q96GE6	196 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	LOXL4	Q96JB6	756 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	CDK5RAP1	Q96SZ6	601 aa	Known RBP	4.56	□□□□□ -1.68
USP44-208	ENST00000552440	POLR3C	Q9BUI4	534 aa	Predicted RBP	4.56	□□□□□ -1.68
USP44-208	ENST00000552440	ITPA	Q9BY32	194 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	WNT8A	Q9H1J5	351 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	RNPEP	Q9H4A4	650 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	ERVMER34-1	Q9H9K5	563 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	MLXIP	Q9HAP2	919 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	SEPSECS	Q9HD40	501 aa	Known RBP	4.56	□□□□□ -1.68
USP44-208	ENST00000552440	SEPT11	Q9NVA2	429 aa	Known RBP	4.56	□□□□□ -1.68
USP44-208	ENST00000552440	RIC8B	Q9NVN3	520 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	4.56	□□□□□ -1.68
USP44-208	ENST00000552440	ADPRHL2	Q9NX46	363 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	LAMP5	Q9UJQ1	280 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	TBX20	Q9UMR3	447 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	SCAF8	Q9UPN6	1271 aa	Known RBP	4.56	□□□□□ -1.68
USP44-208	ENST00000552440	DTNA	Q9Y4J8	743 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	CYP46A1	Q9Y6A2	500 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	CC2D2A	Q9P2K1	1620 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	KIAA0355	O15063	1070 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	SLC16A6	O15403	523 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	SGSM2	O43147	1006 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	CHGB	P05060	677 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	IFNAR1	P17181	557 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	GAP43	P17677	238 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	HLA-DPA1	P20036	260 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	ABCD3	P28288	659 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	THBS2	P35442	1172 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	CCT4	P50991	539 aa	Known RBP	4.56	□□□□□ -1.68
USP44-208	ENST00000552440	IRX3	P78415	501 aa	Predicted RBP	4.56	□□□□□ -1.68
USP44-208	ENST00000552440	DSC2	Q02487	901 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	STK4	Q13043	487 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	SLC14A1	Q13336	389 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	TUSC3	Q13454	348 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	MAMLD1	Q13495	774 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	PRPF4B	Q13523	1007 aa	Known RBP	4.56	□□□□□ -1.68
USP44-208	ENST00000552440	CUL4B	Q13620	913 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	THEMIS2	Q5TEJ8	643 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	WDR73	Q6P4I2	378 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	DCLRE1A	Q6PJP8	1040 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	PPP1R42	Q7Z4L9	355 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	ZNF804A	Q7Z570	1209 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	MIB1	Q86YT6	1006 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	LYSMD2	Q8IV50	215 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	IQCF2	Q8IXL9	164 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	ASB15	Q8WXK1	588 aa		4.56	□□□□□ -1.68
USP44-208	ENST00000552440	DVL3	Q92997	716 aa	Predicted RBP	4.56	□□□□□ -1.68
USP44-208	ENST00000552440	MTFMT	Q96DP5	389 aa	Known RBP	4.56	□□□□□ -1.68
USP44-208	ENST00000552440	IQCD	Q96DY2	449 aa		4.56	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms