RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, human

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIMA1-208	ENST00000551691	KCTD2	Q14681	263 aa		4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	NOLC1	Q14978	699 aa	Known RBP eCLIP	4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	TRIM60	Q495X7	471 aa		4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	FAM209B	Q5JX69	171 aa		4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	IZUMO3	Q5VZ72	239 aa		4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	UNQ6494/PRO21346	Q6UXR6	183 aa		4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	SLC39A5	Q6ZMH5	540 aa		4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	ZC3H18	Q86VM9	953 aa	Known RBP	4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	SYTL1	Q8IYJ3	562 aa		4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	MYCT1	Q8N699	235 aa		4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	ARRDC4	Q8NCT1	418 aa		4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	C3orf20	Q8ND61	904 aa		4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	TSPAN17	Q96FV3	270 aa		4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	SLC35A4	Q96G79	324 aa		4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	TOE1	Q96GM8	510 aa	Known RBP	4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	GORASP1	Q9BQQ3	440 aa		4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	BTBD1	Q9H0C5	482 aa		4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	RSAD1	Q9HA92	442 aa		4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	CD209	Q9NNX6	404 aa		4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	RBM12	Q9NTZ6	932 aa	Known RBP	4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	LMBRD1	Q9NUN5	540 aa		4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	DTL	Q9NZJ0	730 aa		4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	NTM	Q9P121	344 aa		4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	FNIP2	Q9P278	1114 aa		4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	IPP	Q9Y573	584 aa		4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	MYO3B	Q8WXR4	1341 aa		4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	DDX60	Q8IY21	1712 aa	Known RBP	4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	PLXNA1	Q9UIW2	1896 aa		4.37	□□□□□ -1.71
LIMA1-208	ENST00000551691	ATRX	P46100	2492 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	DDX3X	O00571	662 aa	Known RBP eCLIP	4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	MATN3	O15232	486 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	SGSM2	O43147	1006 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	AKR1B10	O60218	316 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	PRAMEF4	O60810	478 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	OPHN1	O60890	802 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	ENDOD1	O94919	500 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	FSHB	P01225	129 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	ITGB3	P05106	788 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	ENO2	P09104	434 aa	Predicted RBP	4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	PARP1	P09874	1014 aa	Known RBP	4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	MYF5	P13349	255 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	TYRP1	P17643	537 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	SLC7A1	P30825	629 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	MAN1A1	P33908	653 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	PIK3CB	P42338	1070 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	MAP2K6	P52564	334 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	AGFG1	P52594	562 aa	Known RBP	4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	MGAT5	Q09328	741 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	NFATC3	Q12968	1075 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	IL10RA	Q13651	578 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	PUM3	Q15397	648 aa	Known RBP	4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	MAPRE1	Q15691	268 aa	Known RBP	4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	TAF12	Q16514	161 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	MAP3K21	Q5TCX8	1036 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	CD276	Q5ZPR3	534 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	ANKRD18A	Q8IVF6	992 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	ZNF527	Q8NB42	609 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	ADAMTS17	Q8TE56	1095 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	PHKB	Q93100	1093 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	FOXRED1	Q96CU9	486 aa	Predicted RBP	4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	FAM167A	Q96KS9	214 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	PARK7	Q99497	189 aa	Known RBP	4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	ISCA1	Q9BUE6	129 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	WDR12	Q9GZL7	423 aa	Known RBP	4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	MANSC1	Q9H8J5	431 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	SLC39A2	Q9NP94	309 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	KCMF1	Q9P0J7	381 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	BCCIP	Q9P287	314 aa	Known RBP eCLIP	4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	MYRF	Q9Y2G1	1151 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	PCDHA13	Q9Y5I0	950 aa		4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	COL1A1	P02452	1464 aa	Predicted RBP	4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	PRRC2B	Q5JSZ5	2229 aa	Known RBP	4.36	□□□□□ -1.71
LIMA1-208	ENST00000551691	DMXL1	Q9Y485	3027 aa		4.35	□□□□□ -1.71
LIMA1-208	ENST00000551691	LTBP2	Q14767	1821 aa		4.35	□□□□□ -1.71
LIMA1-208	ENST00000551691	ACOT7	O00154	380 aa		4.35	□□□□□ -1.71
LIMA1-208	ENST00000551691	TAF5L	O75529	589 aa		4.35	□□□□□ -1.71
LIMA1-208	ENST00000551691	SKAP2	O75563	359 aa	Predicted RBP	4.35	□□□□□ -1.71
LIMA1-208	ENST00000551691	HSD3B1	P14060	373 aa		4.35	□□□□□ -1.71
LIMA1-208	ENST00000551691	ECHS1	P30084	290 aa		4.35	□□□□□ -1.71
LIMA1-208	ENST00000551691	CASP2	P42575	452 aa		4.35	□□□□□ -1.71
LIMA1-208	ENST00000551691	MCAM	P43121	646 aa		4.35	□□□□□ -1.71
LIMA1-208	ENST00000551691	RABGGTB	P53611	331 aa		4.35	□□□□□ -1.71
LIMA1-208	ENST00000551691	NKX3-2	P78367	333 aa		4.35	□□□□□ -1.71
LIMA1-208	ENST00000551691	TLE2	Q04725	743 aa		4.35	□□□□□ -1.71
LIMA1-208	ENST00000551691	TCF15	Q12870	199 aa		4.35	□□□□□ -1.71
LIMA1-208	ENST00000551691	ATP2B3	Q16720	1220 aa		4.35	□□□□□ -1.71
LIMA1-208	ENST00000551691	SLC44A4	Q53GD3	710 aa		4.35	□□□□□ -1.71
LIMA1-208	ENST00000551691	HSP90AB3P	Q58FF7	597 aa		4.35	□□□□□ -1.71
LIMA1-208	ENST00000551691	DGKK	Q5KSL6	1271 aa		4.35	□□□□□ -1.71
LIMA1-208	ENST00000551691	TREML2	Q5T2D2	321 aa		4.35	□□□□□ -1.71
LIMA1-208	ENST00000551691	JAKMIP3	Q5VZ66	844 aa		4.35	□□□□□ -1.71
LIMA1-208	ENST00000551691	MCTP2	Q6DN12	878 aa		4.35	□□□□□ -1.71
LIMA1-208	ENST00000551691	APOA5	Q6Q788	366 aa		4.35	□□□□□ -1.71
LIMA1-208	ENST00000551691	ETV3L	Q6ZN32	361 aa		4.35	□□□□□ -1.71
LIMA1-208	ENST00000551691	RFX8	Q6ZV50	586 aa		4.35	□□□□□ -1.71
LIMA1-208	ENST00000551691	OTOP2	Q7RTS6	562 aa		4.35	□□□□□ -1.71
LIMA1-208	ENST00000551691	LIMS2	Q7Z4I7	341 aa		4.35	□□□□□ -1.71
LIMA1-208	ENST00000551691	SLC41A1	Q8IVJ1	513 aa		4.35	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms