RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 RNFT1Q5M7Z0 435 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 SV2BQ7L1I2 683 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 TMEM150AQ86TG1 271 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 MON1AQ86VX9 555 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 WDR5BQ86VZ2 330 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 GPIHBP1Q8IV16 184 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 PDCL2Q8N4E4 241 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 TOP6BLQ8N6T0 577 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 TTC8Q8TAM2 541 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 GIPC2Q8TF65 315 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 CACTINQ8WUQ7 758 aaKnown RBP8.19□□□□□ -1.1
NEK3-201ENST00000550331 MRPS31Q92665 395 aaKnown RBP8.19□□□□□ -1.1
NEK3-201ENST00000550331 TRMT2BQ96GJ1 504 aaKnown RBP8.19□□□□□ -1.1
NEK3-201ENST00000550331 MYRFLQ96LU7 910 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 KLF16Q9BXK1 252 aaPredicted RBP8.19□□□□□ -1.1
NEK3-201ENST00000550331 IKZF4Q9H2S9 585 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 TMEM206Q9H813 350 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 TDP1Q9NUW8 608 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 GDAP2Q9NXN4 497 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 DDX43Q9NXZ2 648 aaKnown RBP8.19□□□□□ -1.1
NEK3-201ENST00000550331 RBAKQ9NYW8 714 aaPredicted RBP8.19□□□□□ -1.1
NEK3-201ENST00000550331 UXTQ9UBK9 157 aaPredicted RBP8.19□□□□□ -1.1
NEK3-201ENST00000550331 ITGA11Q9UKX5 1188 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 CLIC4Q9Y696 253 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 TRIP11Q15643 1979 aa8.19□□□□□ -1.1
NEK3-201ENST00000550331 TRDMT1O14717 391 aaKnown RBP8.18□□□□□ -1.1
NEK3-201ENST00000550331 GABRDO14764 452 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 EXTL3O43909 919 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 HUS1O60921 280 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 ATG13O75143 517 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 PRPF40AO75400 957 aaKnown RBP8.18□□□□□ -1.1
NEK3-201ENST00000550331 AKAP3O75969 853 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 CENPBP07199 599 aaPredicted RBP8.18□□□□□ -1.1
NEK3-201ENST00000550331 LHX1P48742 406 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 CASP5P51878 434 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 RPL10AP62906 217 aaKnown RBP8.18□□□□□ -1.1
NEK3-201ENST00000550331 MYL7Q01449 175 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 FAM160A1Q05DH4 1040 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 GRSF1Q12849 480 aaKnown RBP eCLIP8.18□□□□□ -1.1
NEK3-201ENST00000550331 RESTQ13127 1097 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 PDGFRLQ15198 375 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 CFAP221Q4G0U5 840 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 TMEM196Q5HYL7 178 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 INTS6LQ5JSJ4 861 aaKnown RBP8.18□□□□□ -1.1
NEK3-201ENST00000550331 HEATR6Q6AI08 1181 aaKnown RBP8.18□□□□□ -1.1
NEK3-201ENST00000550331 CC2D1AQ6P1N0 951 aaPredicted RBP8.18□□□□□ -1.1
NEK3-201ENST00000550331 CEP68Q76N32 757 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 SYCP3Q8IZU3 236 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 MAB21L3Q8N8X9 362 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 C1orf127Q8N9H9 656 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 C12orf50Q8NA57 414 aaPredicted RBP8.18□□□□□ -1.1
NEK3-201ENST00000550331 CXorf38Q8TB03 319 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 USP13Q92995 863 aaPredicted RBP8.18□□□□□ -1.1
NEK3-201ENST00000550331 EXOC4Q96A65 974 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 CHFRQ96EP1 664 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 SAAL1Q96ER3 474 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 FUBP3Q96I24 572 aaKnown RBP eCLIP8.18□□□□□ -1.1
NEK3-201ENST00000550331 CEP295NLQ96MC4 621 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 CLIC6Q96NY7 704 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 PKMYT1Q99640 499 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 SMG9Q9H0W8 520 aaKnown RBP8.18□□□□□ -1.1
NEK3-201ENST00000550331 HPS4Q9NQG7 708 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 GKN1Q9NS71 199 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 TMLHEQ9NVH6 421 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 L1RE1Q9UN81 338 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 AGAP1Q9UPQ3 857 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 CCL26Q9Y258 94 aa8.18□□□□□ -1.1
NEK3-201ENST00000550331 CITO14578 2027 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 KRT19P08727 400 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 IDEP14735 1019 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 JUNDP17535 347 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 SYT1P21579 422 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 PCSK1P29120 753 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 STAT6P42226 847 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 GPR15P49685 360 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 CDR1P51861 262 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 LIMK1P53667 647 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 RBP5P82980 135 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 MYO1EQ12965 1108 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 MTF1Q14872 753 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 SF3A2Q15428 464 aaKnown RBP8.17□□□□□ -1.1
NEK3-201ENST00000550331 FBXO43Q4G163 708 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 C6orf118Q5T5N4 469 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 TXNDC8Q6A555 127 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 FSTL4Q6MZW2 842 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 STXBP4Q6ZWJ1 553 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 DPH6Q7L8W6 267 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 SPATA2LQ8IUW3 424 aaPredicted RBP8.17□□□□□ -1.1
NEK3-201ENST00000550331 ADGRF2Q8IZF7 708 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 GPD1LQ8N335 351 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 CPA6Q8N4T0 437 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 CAMKK1Q8N5S9 505 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 CSGALNACT2Q8N6G5 542 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 GAB3Q8WWW8 586 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 LOXL4Q96JB6 756 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 CBWD1Q9BRT8 395 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 PI4K2AQ9BTU6 479 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 EBF3Q9H4W6 596 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 PANK4Q9NVE7 773 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 INTS13Q9NVM9 706 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms