RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 PLEKHA7Q6IQ23 1121 aa17.46■□□□□ 0.39
CHMP1A-204ENST00000547687 PIK3R5Q8WYR1 880 aa17.46■□□□□ 0.39
CHMP1A-204ENST00000547687 LRRC45Q96CN5 670 aa17.46■□□□□ 0.39
CHMP1A-204ENST00000547687 C18orf8Q96DM3 657 aa17.46■□□□□ 0.39
CHMP1A-204ENST00000547687 CHST12Q9NRB3 414 aa17.46■□□□□ 0.39
CHMP1A-204ENST00000547687 MTCH2Q9Y6C9 303 aa17.46■□□□□ 0.39
CHMP1A-204ENST00000547687 SCINQ9Y6U3 715 aa17.46■□□□□ 0.39
CHMP1A-204ENST00000547687 TCRBV7S2A1N4TA0A589 114 aa17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 PPEF2O14830 753 aa17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 CSPG5O95196 566 aa17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 BRD2P25440 801 aaKnown RBP17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 PTGIRP43119 386 aa17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 LMAN1P49257 510 aa17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 YWHAEP62258 255 aaKnown RBP17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 XKR4Q5GH76 650 aa17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 DUPD1Q68J44 220 aa17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 SMYD5Q6GMV2 418 aa17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 JAMLQ86YT9 394 aa17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 BEST2Q8NFU1 509 aa17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 TRIM31Q9BZY9 425 aa17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 SDCBP2Q9H190 292 aa17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 SMYD3Q9H7B4 428 aa17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 RC3H2Q9HBD1 1191 aaKnown RBP17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 FAM105AQ9NUU6 356 aa17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 PARVAQ9NVD7 372 aa17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 PCYOX1Q9UHG3 505 aa17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 RASAL2Q9UJF2 1139 aa17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 MEIS3P2A8K0S8 358 aa17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 DGKIO75912 1065 aa17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 LSM8O95777 96 aaKnown RBP17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 RARAP10276 462 aa17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 MMP8P22894 467 aa17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 CYP1B1Q16678 543 aa17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 CRIPAKQ8N1N5 446 aa17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 FAXDC2Q96IV6 333 aa17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 UBQLN1Q9UMX0 589 aaKnown RBP17.45■□□□□ 0.38
CHMP1A-204ENST00000547687 GOLGA6CA6NDK9 693 aa17.44■□□□□ 0.38
CHMP1A-204ENST00000547687 FSCN2O14926 492 aa17.44■□□□□ 0.38
CHMP1A-204ENST00000547687 GOLGA6DP0CG33 693 aa17.44■□□□□ 0.38
CHMP1A-204ENST00000547687 KCNE1P15382 129 aa17.44■□□□□ 0.38
CHMP1A-204ENST00000547687 BTG3Q14201 252 aaPredicted RBP17.44■□□□□ 0.38
CHMP1A-204ENST00000547687 TTC27Q6P3X3 843 aa17.44■□□□□ 0.38
CHMP1A-204ENST00000547687 CCDC137Q6PK04 289 aaKnown RBP17.44■□□□□ 0.38
CHMP1A-204ENST00000547687 TMEM35BQ8NCS4 154 aa17.44■□□□□ 0.38
CHMP1A-204ENST00000547687 FBXO22Q8NEZ5 403 aa17.44■□□□□ 0.38
CHMP1A-204ENST00000547687 FEZF2Q8TBJ5 459 aa17.44■□□□□ 0.38
CHMP1A-204ENST00000547687 RUNDC3BQ96NL0 473 aa17.44■□□□□ 0.38
CHMP1A-204ENST00000547687 GOLGA6AQ9NYA3 693 aa17.44■□□□□ 0.38
CHMP1A-204ENST00000547687 HCSTQ9UBK5 93 aa17.44■□□□□ 0.38
CHMP1A-204ENST00000547687 LRFN2Q9ULH4 789 aa17.44■□□□□ 0.38
CHMP1A-204ENST00000547687 STAU1O95793 577 aaKnown RBP17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 FLT3P36888 993 aa17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 COILP38432 576 aaPredicted RBP17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 DRG2P55039 364 aaKnown RBP17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 SIX1Q15475 284 aaPredicted RBP17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 FIBCD1Q8N539 461 aa17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 ZNF689Q96CS4 500 aaPredicted RBP17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 ZFP42Q96MM3 310 aa17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 ZNF518BQ9C0D4 1074 aa17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 RGS18Q9NS28 235 aa17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 TCF20Q9UGU0 1960 aaKnown RBP17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 TTC28Q96AY4 2481 aa17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 PODXLO00592 558 aa17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 CALB1P05937 261 aa17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 FGFR1P11362 822 aa17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 P4HA1P13674 534 aa17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 HSD17B3P37058 310 aa17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 SOX4Q06945 474 aaPredicted RBP17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 MYO1EQ12965 1108 aa17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 NPAS4Q8IUM7 802 aa17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 C1orf131Q8NDD1 294 aaKnown RBP17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 FAM76AQ8TAV0 307 aa17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 TFAP2BQ92481 460 aa17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 ARL8AQ96BM9 186 aa17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 DDX27Q96GQ7 796 aaKnown RBP17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 GOLGA2P5Q9HBQ8 144 aa17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 PCDHGC3Q9UN70 934 aa17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 PLXNA4Q9HCM2 1894 aa17.43■□□□□ 0.38
CHMP1A-204ENST00000547687 C9IYK1 514 aa17.42■□□□□ 0.38
CHMP1A-204ENST00000547687 PTGESO14684 152 aa17.42■□□□□ 0.38
CHMP1A-204ENST00000547687 LINC00271P0C7V0 271 aa17.42■□□□□ 0.38
CHMP1A-204ENST00000547687 CTNNB1P35222 781 aa17.42■□□□□ 0.38
CHMP1A-204ENST00000547687 DSC3Q14574 896 aa17.42■□□□□ 0.38
CHMP1A-204ENST00000547687 SKIV2LQ15477 1246 aaKnown RBP17.42■□□□□ 0.38
CHMP1A-204ENST00000547687 C9orf57Q5W0N0 161 aa17.42■□□□□ 0.38
CHMP1A-204ENST00000547687 RHOT1Q8IXI2 618 aa17.42■□□□□ 0.38
CHMP1A-204ENST00000547687 CCDC105Q8IYK2 499 aa17.42■□□□□ 0.38
CHMP1A-204ENST00000547687 RNF169Q8NCN4 708 aa17.42■□□□□ 0.38
CHMP1A-204ENST00000547687 LPPQ93052 612 aa17.42■□□□□ 0.38
CHMP1A-204ENST00000547687 CYP3A43Q9HB55 503 aa17.42■□□□□ 0.38
CHMP1A-204ENST00000547687 HMGXB4Q9UGU5 601 aa17.42■□□□□ 0.38
CHMP1A-204ENST00000547687 PLAAQ9Y263 795 aa17.42■□□□□ 0.38
CHMP1A-204ENST00000547687 SNX24Q9Y343 169 aa17.42■□□□□ 0.38
CHMP1A-204ENST00000547687 PCDHB7Q9Y5E2 793 aa17.42■□□□□ 0.38
CHMP1A-204ENST00000547687 MRPL42Q9Y6G3 142 aaKnown RBP17.42■□□□□ 0.38
CHMP1A-204ENST00000547687 ERICH4A6NGS2 130 aa17.42■□□□□ 0.38
CHMP1A-204ENST00000547687 GJB6O95452 261 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms