RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 FBXO25Q8TCJ0 367 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 E2F7Q96AV8 911 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 SGF29Q96ES7 293 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 LRGUKQ96M69 825 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 NUDT12Q9BQG2 462 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 EIF2AQ9BY44 585 aaKnown RBP5.51□□□□□ -1.53
USP28-213ENST00000544967 C1orf21Q9H246 121 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 LRRC19Q9H756 370 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 RNF146Q9NTX7 359 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 MRGBPQ9NV56 204 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 MATN2O00339 956 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 NKRFO15226 690 aaKnown RBP eCLIP5.51□□□□□ -1.53
USP28-213ENST00000544967 PIP5K1CO60331 668 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 TTC4O95801 387 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 RPL5P46777 297 aaKnown RBP5.51□□□□□ -1.53
USP28-213ENST00000544967 FXR2P51116 673 aaKnown RBP eCLIP5.51□□□□□ -1.53
USP28-213ENST00000544967 AP2B1P63010 937 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 ASIC1P78348 528 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 GSTM4Q03013 218 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 NFIL3Q16649 462 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 GRAMD1BQ3KR37 738 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 KHDC1Q4VXA5 237 aaKnown RBP5.51□□□□□ -1.53
USP28-213ENST00000544967 C6orf163Q5TEZ5 329 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 FYB2Q5VWT5 728 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 LHX8Q68G74 356 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 Q6ZNX1 250 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 SEPT14Q6ZU15 432 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 FAM186BQ8IYM0 893 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 PPP1R14CQ8TAE6 165 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 GABPB2Q8TAK5 448 aaPredicted RBP5.51□□□□□ -1.53
USP28-213ENST00000544967 EPS8L3Q8TE67 593 aaKnown RBP5.51□□□□□ -1.53
USP28-213ENST00000544967 DQX1Q8TE96 717 aaKnown RBP5.51□□□□□ -1.53
USP28-213ENST00000544967 GIMAP1Q8WWP7 306 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 JADE3Q92613 823 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 KCNN1Q92952 543 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 HPS3Q969F9 1004 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 PIGSQ96S52 555 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 MMP19Q99542 508 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 HNRNPABQ99729 332 aaKnown RBP5.51□□□□□ -1.53
USP28-213ENST00000544967 CORO1BQ9BR76 489 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 MYL10Q9BUA6 226 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 NT5C3AQ9H0P0 336 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 PXMP2Q9NR77 195 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 METTL5Q9NRN9 209 aaKnown RBP5.51□□□□□ -1.53
USP28-213ENST00000544967 RNF19AQ9NV58 838 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 GABRQQ9UN88 632 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 UBIAD1Q9Y5Z9 338 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 IGLV3-22A0A075B6J6 115 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 ASB14A6NK59 587 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 NFIBO00712 420 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 ENPP3O14638 875 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 CAPN9O14815 690 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 CASQ2O14958 399 aaPredicted RBP5.51□□□□□ -1.53
USP28-213ENST00000544967 SLC16A3O15427 465 aaKnown RBP5.51□□□□□ -1.53
USP28-213ENST00000544967 FAM155BO75949 473 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 FGGP02679 453 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 MYL3P08590 195 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 ITGA4P13612 1032 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 BRAFP15056 766 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 EPHB2P29323 1055 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 TXKP42681 527 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 EMP3P54852 163 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 SESN3P58005 492 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 KIF22Q14807 665 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 KYNUQ16719 465 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 DNAL1Q4LDG9 190 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 SLC44A4Q53GD3 710 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 ACSBG2Q5FVE4 666 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 SLC30A10Q6XR72 485 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 SV2BQ7L1I2 683 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 SFR1Q86XK3 245 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 CCNJLQ8IV13 435 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 PLEKHO2Q8TD55 490 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 STAMQ92783 540 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 LENG9Q96B70 501 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 COA7Q96BR5 231 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 CALML4Q96GE6 196 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 NSL1Q96IY1 281 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 PRICKLE1Q96MT3 831 aaPredicted RBP5.51□□□□□ -1.53
USP28-213ENST00000544967 TSEN34Q9BSV6 310 aaKnown RBP5.51□□□□□ -1.53
USP28-213ENST00000544967 LSM14BQ9BX40 385 aaKnown RBP5.51□□□□□ -1.53
USP28-213ENST00000544967 AP1M1Q9BXS5 423 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 CADM1Q9BY67 442 aaKnown RBP5.51□□□□□ -1.53
USP28-213ENST00000544967 MRPS26Q9BYN8 205 aaKnown RBP5.51□□□□□ -1.53
USP28-213ENST00000544967 RBM38Q9H0Z9 239 aaKnown RBP5.51□□□□□ -1.53
USP28-213ENST00000544967 TSPYL2Q9H2G4 693 aaPredicted RBP5.51□□□□□ -1.53
USP28-213ENST00000544967 SEMA4AQ9H3S1 761 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 OCEL1Q9H607 264 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 PALMDQ9NP74 551 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 LUZP4Q9P127 313 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 ZFP69BQ9UJL9 534 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 MTUS1Q9ULD2 1270 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 CCPG1Q9ULG6 757 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 PHTF1Q9UMS5 762 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 SORCS3Q9UPU3 1222 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 MTO1Q9Y2Z2 717 aaKnown RBP5.51□□□□□ -1.53
USP28-213ENST00000544967 FADS3Q9Y5Q0 445 aa5.51□□□□□ -1.53
USP28-213ENST00000544967 H0Y3Z8 333 aa5.5□□□□□ -1.53
USP28-213ENST00000544967 ZNF701M0R085 212 aaPredicted RBP5.5□□□□□ -1.53
USP28-213ENST00000544967 TSPAN6O43657 245 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms