RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 KIF12Q96FN5 646 aa18.89■□□□□ 0.61
VIM-209ENST00000544301 FAM124BQ9H5Z6 455 aaPredicted RBP18.89■□□□□ 0.61
VIM-209ENST00000544301 KIAA1257Q9ULG3 409 aa18.89■□□□□ 0.61
VIM-209ENST00000544301 PDHXO00330 501 aa18.88■□□□□ 0.61
VIM-209ENST00000544301 PIK3R2O00459 728 aa18.88■□□□□ 0.61
VIM-209ENST00000544301 BANF1O75531 89 aa18.88■□□□□ 0.61
VIM-209ENST00000544301 GPD1P21695 349 aa18.88■□□□□ 0.61
VIM-209ENST00000544301 STX2P32856 288 aa18.88■□□□□ 0.61
VIM-209ENST00000544301 GRIK4Q16099 956 aa18.88■□□□□ 0.61
VIM-209ENST00000544301 TRNP1Q6NT89 227 aa18.88■□□□□ 0.61
VIM-209ENST00000544301 DPY19L2Q6NUT2 758 aa18.88■□□□□ 0.61
VIM-209ENST00000544301 PPP1R21Q6ZMI0 780 aa18.88■□□□□ 0.61
VIM-209ENST00000544301 CAPN12Q6ZSI9 719 aa18.88■□□□□ 0.61
VIM-209ENST00000544301 TTC39CQ8N584 583 aa18.88■□□□□ 0.61
VIM-209ENST00000544301 CNPY3Q9BT09 278 aa18.88■□□□□ 0.61
VIM-209ENST00000544301 NT5C1AQ9BXI3 368 aa18.88■□□□□ 0.61
VIM-209ENST00000544301 TSPAN16Q9UKR8 245 aa18.88■□□□□ 0.61
VIM-209ENST00000544301 C2CD4BA6NLJ0 364 aa18.88■□□□□ 0.61
VIM-209ENST00000544301 E5RJQ4 531 aa18.88■□□□□ 0.61
VIM-209ENST00000544301 PFKMP08237 780 aa18.88■□□□□ 0.61
VIM-209ENST00000544301 GRM5P41594 1212 aa18.88■□□□□ 0.61
VIM-209ENST00000544301 EIF3EP60228 445 aaKnown RBP18.88■□□□□ 0.61
VIM-209ENST00000544301 NUGGCQ68CJ6 796 aa18.88■□□□□ 0.61
VIM-209ENST00000544301 FAM183BPQ6ZVS7 135 aa18.88■□□□□ 0.61
VIM-209ENST00000544301 CYP4V2Q6ZWL3 525 aaPredicted RBP18.88■□□□□ 0.61
VIM-209ENST00000544301 ZNF467Q7Z7K2 595 aaPredicted RBP18.88■□□□□ 0.61
VIM-209ENST00000544301 ANKMY2Q8IV38 441 aa18.88■□□□□ 0.61
VIM-209ENST00000544301 RXFP2Q8WXD0 754 aa18.88■□□□□ 0.61
VIM-209ENST00000544301 MAGEB18Q96M61 343 aa18.88■□□□□ 0.61
VIM-209ENST00000544301 CALN1Q9BXU9 219 aa18.88■□□□□ 0.61
VIM-209ENST00000544301 RSAD1Q9HA92 442 aa18.88■□□□□ 0.61
VIM-209ENST00000544301 USP15Q9Y4E8 981 aaPredicted RBP18.88■□□□□ 0.61
VIM-209ENST00000544301 FAM47DPA6NHR8 397 aa18.87■□□□□ 0.61
VIM-209ENST00000544301 ENDOD1O94919 500 aa18.87■□□□□ 0.61
VIM-209ENST00000544301 GPX6P59796 221 aa18.87■□□□□ 0.61
VIM-209ENST00000544301 RAB6CQ53S08 254 aa18.87■□□□□ 0.61
VIM-209ENST00000544301 FNBP1LQ5T0N5 605 aa18.87■□□□□ 0.61
VIM-209ENST00000544301 OR6B2Q6IFH4 312 aa18.87■□□□□ 0.61
VIM-209ENST00000544301 TRPM8Q7Z2W7 1104 aa18.87■□□□□ 0.61
VIM-209ENST00000544301 C12orf29Q8N999 325 aa18.87■□□□□ 0.61
VIM-209ENST00000544301 PIWIL1Q96J94 861 aaKnown RBP18.87■□□□□ 0.61
VIM-209ENST00000544301 TGS1Q96RS0 853 aaKnown RBP18.87■□□□□ 0.61
VIM-209ENST00000544301 PHACTR1Q9C0D0 580 aa18.87■□□□□ 0.61
VIM-209ENST00000544301 RAB6CQ9H0N0 254 aa18.87■□□□□ 0.61
VIM-209ENST00000544301 SLC40A1Q9NP59 571 aa18.87■□□□□ 0.61
VIM-209ENST00000544301 UBN1Q9NPG3 1134 aa18.87■□□□□ 0.61
VIM-209ENST00000544301 STRNO43815 780 aa18.86■□□□□ 0.61
VIM-209ENST00000544301 RASSF9O75901 435 aa18.86■□□□□ 0.61
VIM-209ENST00000544301 PDGFRAP16234 1089 aa18.86■□□□□ 0.61
VIM-209ENST00000544301 YBX3P16989 372 aaKnown RBP eCLIP18.86■□□□□ 0.613e-8■■□□□ 11.9
VIM-209ENST00000544301 ARL4CP56559 192 aa18.86■□□□□ 0.61
VIM-209ENST00000544301 MMRN1Q13201 1228 aa18.86■□□□□ 0.61
VIM-209ENST00000544301 MSS51Q4VC12 460 aa18.86■□□□□ 0.61
VIM-209ENST00000544301 ZNF410Q86VK4 478 aa18.86■□□□□ 0.61
VIM-209ENST00000544301 FAM71DQ8N9W8 422 aa18.86■□□□□ 0.61
VIM-209ENST00000544301 CXCL16Q9H2A7 254 aa18.86■□□□□ 0.61
VIM-209ENST00000544301 SPON1Q9HCB6 807 aa18.86■□□□□ 0.61
VIM-209ENST00000544301 GBA2Q9HCG7 927 aaPredicted RBP18.86■□□□□ 0.61
VIM-209ENST00000544301 CITO14578 2027 aa18.86■□□□□ 0.61
VIM-209ENST00000544301 CLUHO75153 1309 aa18.86■□□□□ 0.61
VIM-209ENST00000544301 MCF2LO15068 1137 aa18.86■□□□□ 0.61
VIM-209ENST00000544301 SMPD1P17405 629 aa18.86■□□□□ 0.61
VIM-209ENST00000544301 CDH6P55285 790 aa18.86■□□□□ 0.61
VIM-209ENST00000544301 PKN2Q16513 984 aaKnown RBP18.86■□□□□ 0.61
VIM-209ENST00000544301 C15orf59Q2T9L4 293 aaPredicted RBP18.86■□□□□ 0.61
VIM-209ENST00000544301 GOLGA7BQ2TAP0 167 aa18.86■□□□□ 0.61
VIM-209ENST00000544301 SPATA18Q8TC71 538 aa18.86■□□□□ 0.61
VIM-209ENST00000544301 SGSM3Q96HU1 749 aa18.86■□□□□ 0.61
VIM-209ENST00000544301 MIS12Q9H081 205 aa18.86■□□□□ 0.61
VIM-209ENST00000544301 PPCSQ9HAB8 311 aa18.86■□□□□ 0.61
VIM-209ENST00000544301 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.86■□□□□ 0.61
VIM-209ENST00000544301 SLC24A2Q9UI40 661 aa18.86■□□□□ 0.61
VIM-209ENST00000544301 ZMYND8Q9ULU4 1186 aaPredicted RBP18.86■□□□□ 0.61
VIM-209ENST00000544301 TCRBV7S3A2A0A539 114 aa18.85■□□□□ 0.61
VIM-209ENST00000544301 BTBD19C9JJ37 291 aa18.85■□□□□ 0.61
VIM-209ENST00000544301 SPAG7O75391 227 aa18.85■□□□□ 0.61
VIM-209ENST00000544301 NPTXRO95502 500 aa18.85■□□□□ 0.61
VIM-209ENST00000544301 MMP3P08254 477 aa18.85■□□□□ 0.61
VIM-209ENST00000544301 RBP3P10745 1247 aa18.85■□□□□ 0.61
VIM-209ENST00000544301 HOXD8P13378 290 aaPredicted RBP18.85■□□□□ 0.61
VIM-209ENST00000544301 RDXP35241 583 aaKnown RBP18.85■□□□□ 0.61
VIM-209ENST00000544301 WDR4P57081 412 aaKnown RBP18.85■□□□□ 0.61
VIM-209ENST00000544301 MKRN3Q13064 507 aaKnown RBP18.85■□□□□ 0.61
VIM-209ENST00000544301 RASA2Q15283 850 aa18.85■□□□□ 0.61
VIM-209ENST00000544301 KIZQ2M2Z5 673 aa18.85■□□□□ 0.61
VIM-209ENST00000544301 DCAF4L1Q3SXM0 396 aa18.85■□□□□ 0.61
VIM-209ENST00000544301 NPNTQ6UXI9 565 aa18.85■□□□□ 0.61
VIM-209ENST00000544301 TAB3Q8N5C8 712 aaPredicted RBP18.85■□□□□ 0.61
VIM-209ENST00000544301 PYROXD1Q8WU10 500 aa18.85■□□□□ 0.61
VIM-209ENST00000544301 MAK16Q9BXY0 300 aaKnown RBP18.85■□□□□ 0.61
VIM-209ENST00000544301 TRABDQ9H4I3 376 aa18.85■□□□□ 0.61
VIM-209ENST00000544301 ABCF3Q9NUQ8 709 aa18.85■□□□□ 0.61
VIM-209ENST00000544301 SLC12A4Q9UP95 1085 aa18.85■□□□□ 0.61
VIM-209ENST00000544301 E7ESA3 106 aa18.85■□□□□ 0.61
VIM-209ENST00000544301 PRPF4O43172 522 aaKnown RBP eCLIP18.85■□□□□ 0.61
VIM-209ENST00000544301 GRAP2O75791 330 aa18.85■□□□□ 0.61
VIM-209ENST00000544301 DNAJC8O75937 253 aaPredicted RBP18.85■□□□□ 0.61
VIM-209ENST00000544301 FOXN2P32314 431 aa18.85■□□□□ 0.61
VIM-209ENST00000544301 RGS7P49802 495 aa18.85■□□□□ 0.61
VIM-209ENST00000544301 IL9RQ01113 521 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms