RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 DNM1Q05193 864 aaKnown RBP13.99□□□□□ -0.17
RTN3-213ENST00000543552 CCDC142Q17RM4 750 aa13.99□□□□□ -0.17
RTN3-213ENST00000543552 SCARA3Q6AZY7 606 aa13.99□□□□□ -0.17
RTN3-213ENST00000543552 TRIM68Q6AZZ1 485 aa13.99□□□□□ -0.17
RTN3-213ENST00000543552 CEP68Q76N32 757 aa13.99□□□□□ -0.17
RTN3-213ENST00000543552 WDR5BQ86VZ2 330 aa13.99□□□□□ -0.17
RTN3-213ENST00000543552 KIAA1958Q8N8K9 716 aa13.99□□□□□ -0.17
RTN3-213ENST00000543552 B3GALNT2Q8NCR0 500 aa13.99□□□□□ -0.17
RTN3-213ENST00000543552 SLITRK1Q96PX8 696 aa13.99□□□□□ -0.17
RTN3-213ENST00000543552 P2RY13Q9BPV8 354 aa13.99□□□□□ -0.17
RTN3-213ENST00000543552 TTLL2Q9BWV7 592 aa13.99□□□□□ -0.17
RTN3-213ENST00000543552 ECT2Q9H8V3 914 aa13.99□□□□□ -0.17
RTN3-213ENST00000543552 DLL3Q9NYJ7 618 aa13.99□□□□□ -0.17
RTN3-213ENST00000543552 NXF1Q9UBU9 619 aaKnown RBP13.99□□□□□ -0.17
RTN3-213ENST00000543552 CDV3Q9UKY7 258 aaKnown RBP13.99□□□□□ -0.17
RTN3-213ENST00000543552 SLC8A2Q9UPR5 921 aa13.99□□□□□ -0.17
RTN3-213ENST00000543552 CCDC163A0A0D9SF12 145 aa13.98□□□□□ -0.17
RTN3-213ENST00000543552 CST3P01034 146 aaPredicted RBP13.98□□□□□ -0.17
RTN3-213ENST00000543552 ARSAP15289 507 aa13.98□□□□□ -0.17
RTN3-213ENST00000543552 PTPN1P18031 435 aaKnown RBP13.98□□□□□ -0.17
RTN3-213ENST00000543552 KRT85P78386 507 aa13.98□□□□□ -0.17
RTN3-213ENST00000543552 RSPO4Q2I0M5 234 aaPredicted RBP13.98□□□□□ -0.17
RTN3-213ENST00000543552 ZNF699Q32M78 642 aa13.98□□□□□ -0.17
RTN3-213ENST00000543552 WDR44Q5JSH3 913 aa13.98□□□□□ -0.17
RTN3-213ENST00000543552 TDRD10Q5VZ19 366 aaKnown RBP13.98□□□□□ -0.17
RTN3-213ENST00000543552 HEATR6Q6AI08 1181 aaKnown RBP13.98□□□□□ -0.17
RTN3-213ENST00000543552 SLC9A9Q8IVB4 645 aa13.98□□□□□ -0.17
RTN3-213ENST00000543552 ARL14EPQ8N8R7 260 aaPredicted RBP13.98□□□□□ -0.17
RTN3-213ENST00000543552 PDZD8Q8NEN9 1154 aa13.98□□□□□ -0.17
RTN3-213ENST00000543552 SH3RF2Q8TEC5 729 aa13.98□□□□□ -0.17
RTN3-213ENST00000543552 TMEM174Q8WUU8 243 aa13.98□□□□□ -0.17
RTN3-213ENST00000543552 ACDQ96AP0 544 aa13.98□□□□□ -0.17
RTN3-213ENST00000543552 TNIP3Q96KP6 325 aa13.98□□□□□ -0.17
RTN3-213ENST00000543552 CYP2S1Q96SQ9 504 aa13.98□□□□□ -0.17
RTN3-213ENST00000543552 MRPL45Q9BRJ2 306 aaKnown RBP13.98□□□□□ -0.17
RTN3-213ENST00000543552 VRTNQ9H8Y1 702 aa13.98□□□□□ -0.17
RTN3-213ENST00000543552 GCNT4Q9P109 453 aa13.98□□□□□ -0.17
RTN3-213ENST00000543552 SERTAD1Q9UHV2 236 aa13.98□□□□□ -0.17
RTN3-213ENST00000543552 ATP6V1DQ9Y5K8 247 aa13.98□□□□□ -0.17
RTN3-213ENST00000543552 C2orf78A6NCI8 922 aa13.97□□□□□ -0.17
RTN3-213ENST00000543552 F8VP50 259 aa13.97□□□□□ -0.17
RTN3-213ENST00000543552 PDXKO00764 312 aa13.97□□□□□ -0.17
RTN3-213ENST00000543552 SLC9A3R1O14745 358 aaPredicted RBP13.97□□□□□ -0.17
RTN3-213ENST00000543552 ACTN4O43707 911 aaKnown RBP13.97□□□□□ -0.17
RTN3-213ENST00000543552 RTN3O95197 1032 aaPredicted RBP13.97□□□□□ -0.17
RTN3-213ENST00000543552 PFKFB1P16118 471 aa13.97□□□□□ -0.17
RTN3-213ENST00000543552 CMA1P23946 247 aa13.97□□□□□ -0.17
RTN3-213ENST00000543552 GJA4P35212 333 aa13.97□□□□□ -0.17
RTN3-213ENST00000543552 MYL6P60660 151 aa13.97□□□□□ -0.17
RTN3-213ENST00000543552 NCOA4Q13772 614 aa13.97□□□□□ -0.17
RTN3-213ENST00000543552 LPAL2Q16609 132 aa13.97□□□□□ -0.17
RTN3-213ENST00000543552 ZNF667Q5HYK9 610 aa13.97□□□□□ -0.17
RTN3-213ENST00000543552 FSTL4Q6MZW2 842 aa13.97□□□□□ -0.17
RTN3-213ENST00000543552 DDX42Q86XP3 938 aaKnown RBP eCLIP13.97□□□□□ -0.17
RTN3-213ENST00000543552 GRAMD1CQ8IYS0 662 aa13.97□□□□□ -0.17
RTN3-213ENST00000543552 CAMKK1Q8N5S9 505 aa13.97□□□□□ -0.17
RTN3-213ENST00000543552 PARD3BQ8TEW8 1205 aa13.97□□□□□ -0.17
RTN3-213ENST00000543552 CD101Q93033 1021 aa13.97□□□□□ -0.17
RTN3-213ENST00000543552 PAGE5Q96GU1 130 aa13.97□□□□□ -0.17
RTN3-213ENST00000543552 CCDC34Q96HJ3 373 aa13.97□□□□□ -0.17
RTN3-213ENST00000543552 SPATA32Q96LK8 384 aa13.97□□□□□ -0.17
RTN3-213ENST00000543552 SLC22A12Q96S37 553 aa13.97□□□□□ -0.17
RTN3-213ENST00000543552 XYLT2Q9H1B5 865 aa13.97□□□□□ -0.17
RTN3-213ENST00000543552 FRMD4BQ9Y2L6 1034 aa13.97□□□□□ -0.17
RTN3-213ENST00000543552 WNT6Q9Y6F9 365 aa13.97□□□□□ -0.17
RTN3-213ENST00000543552 PTPRDP23468 1912 aa13.96□□□□□ -0.17
RTN3-213ENST00000543552 OTOL1A6NHN0 477 aaPredicted RBP13.96□□□□□ -0.17
RTN3-213ENST00000543552 CALUO43852 315 aaPredicted RBP13.96□□□□□ -0.17
RTN3-213ENST00000543552 RNF40O75150 1001 aa13.96□□□□□ -0.17
RTN3-213ENST00000543552 AKAP3O75969 853 aa13.96□□□□□ -0.17
RTN3-213ENST00000543552 RPN1P04843 607 aaKnown RBP13.96□□□□□ -0.17
RTN3-213ENST00000543552 CLDN10P78369 228 aa13.96□□□□□ -0.17
RTN3-213ENST00000543552 SLC7A9P82251 487 aa13.96□□□□□ -0.17
RTN3-213ENST00000543552 DMWDQ09019 674 aa13.96□□□□□ -0.17
RTN3-213ENST00000543552 STK4Q13043 487 aa13.96□□□□□ -0.17
RTN3-213ENST00000543552 PKP1Q13835 747 aa13.96□□□□□ -0.17
RTN3-213ENST00000543552 EML3Q32P44 896 aa13.96□□□□□ -0.17
RTN3-213ENST00000543552 SPRYD3Q8NCJ5 442 aa13.96□□□□□ -0.17
RTN3-213ENST00000543552 RIN3Q8TB24 985 aa13.96□□□□□ -0.17
RTN3-213ENST00000543552 OVCA2Q8WZ82 227 aa13.96□□□□□ -0.17
RTN3-213ENST00000543552 TAF4BQ92750 862 aa13.96□□□□□ -0.17
RTN3-213ENST00000543552 DNAI2Q9GZS0 605 aa13.96□□□□□ -0.17
RTN3-213ENST00000543552 HELZP42694 1942 aaKnown RBP13.96□□□□□ -0.18
RTN3-213ENST00000543552 GREB1Q4ZG55 1949 aa13.96□□□□□ -0.18
RTN3-213ENST00000543552 ZNF840PA6NDX5 716 aa13.95□□□□□ -0.18
RTN3-213ENST00000543552 LRRIQ3A6PVS8 624 aaPredicted RBP13.95□□□□□ -0.18
RTN3-213ENST00000543552 HRO43593 1189 aa13.95□□□□□ -0.18
RTN3-213ENST00000543552 KLRC4O43908 158 aa13.95□□□□□ -0.18
RTN3-213ENST00000543552 RPP40O75818 363 aaKnown RBP13.95□□□□□ -0.18
RTN3-213ENST00000543552 ABL1P00519 1130 aa13.95□□□□□ -0.18
RTN3-213ENST00000543552 EGFP01133 1207 aa13.95□□□□□ -0.18
RTN3-213ENST00000543552 NR3C1P04150 777 aa13.95□□□□□ -0.18
RTN3-213ENST00000543552 SYKP43405 635 aa13.95□□□□□ -0.18
RTN3-213ENST00000543552 CASP4P49662 377 aa13.95□□□□□ -0.18
RTN3-213ENST00000543552 GALK1P51570 392 aa13.95□□□□□ -0.18
RTN3-213ENST00000543552 USP46P62068 366 aa13.95□□□□□ -0.18
RTN3-213ENST00000543552 SPEM2Q0P670 501 aa13.95□□□□□ -0.18
RTN3-213ENST00000543552 SGSM1Q2NKQ1 1148 aa13.95□□□□□ -0.18
RTN3-213ENST00000543552 KMT5BQ4FZB7 885 aa13.95□□□□□ -0.18
RTN3-213ENST00000543552 NUP93Q8N1F7 819 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms