RNA–Protein interactions for RNA: ENST00000542112.5

SNHG1-219, Transcript of small nucleolar RNA host gene 1, human

TSL 3 BASIC

Gene SNHG1, Length 780 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-219	ENST00000542112	NUDCD1	Q96RS6	583 aa		4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	PSD2	Q9BQI7	771 aa		4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	SDF4	Q9BRK5	362 aa		4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	TRIM15	Q9C019	465 aa		4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	BRINP2	Q9C0B6	783 aa		4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	TLE6	Q9H808	572 aa		4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	UBN1	Q9NPG3	1134 aa		4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	NLRC4	Q9NPP4	1024 aa		4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	C12orf4	Q9NQ89	552 aa		4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	GDF3	Q9NR23	364 aa		4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	FARSB	Q9NSD9	589 aa	Known RBP	4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	ABCF3	Q9NUQ8	709 aa		4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	STMN3	Q9NZ72	180 aa		4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	EHD2	Q9NZN4	543 aa		4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	STX18	Q9P2W9	335 aa	Known RBP	4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	HMGXB4	Q9UGU5	601 aa		4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	GNPTG	Q9UJJ9	305 aa		4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	ANAPC5	Q9UJX4	755 aa		4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	GRID1	Q9ULK0	1009 aa		4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	AKAP8L	Q9ULX6	646 aa	Known RBP eCLIP	4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	STX8	Q9UNK0	236 aa		4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	TMEM5	Q9Y2B1	443 aa		4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	ARL2BP	Q9Y2Y0	163 aa		4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	USP15	Q9Y4E8	981 aa	Predicted RBP	4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	HEY1	Q9Y5J3	304 aa		4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	CORIN	Q9Y5Q5	1042 aa		4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	CSAD	Q9Y600	493 aa		4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	ADGRB2	O60241	1585 aa		4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	ANKAR	Q7Z5J8	1434 aa		4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	RIMS2	Q9UQ26	1411 aa		4.55	□□□□□ -1.68
SNHG1-219	ENST00000542112	TOPAZ1	Q8N9V7	1692 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	TNR	Q92752	1358 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	MAP2	P11137	1827 aa	Known RBP	4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	KIF20B	Q96Q89	1820 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	GRID2IP	A4D2P6	1211 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	ZNF233	A6NK53	670 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112		F8W8V4	182 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112		H3BNX3	289 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	ENPP3	O14638	875 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	IRS4	O14654	1257 aa	Predicted RBP	4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	TNFRSF10C	O14798	259 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	KRT86	O43790	486 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	SNX3	O60493	162 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	TMCC2	O75069	709 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	CSDE1	O75534	798 aa	Known RBP	4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	TRMU	O75648	421 aa	Known RBP	4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	OR5F1	O95221	314 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	WISP1	O95388	367 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	DDX58	O95786	925 aa	Known RBP	4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	OAS1	P00973	400 aa	Known RBP	4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	OCM2	P0CE71	109 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	OCM	P0CE72	109 aa	Predicted RBP	4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	MTHFD1	P11586	935 aa	Known RBP	4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	ADH5	P11766	374 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	KRT13	P13646	458 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	P4HA1	P13674	534 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	ZNF3	P17036	446 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	GAP43	P17677	238 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	DDX5	P17844	614 aa	Known RBP	4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	ATF6	P18850	670 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	PSMA5	P28066	241 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	TYK2	P29597	1187 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	ADSL	P30566	484 aa	Predicted RBP	4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	GTF2H1	P32780	548 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	CCNF	P41002	786 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	PAFAH1B1	P43034	410 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	PIP4K2A	P48426	406 aa	Predicted RBP	4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	POLD2	P49005	469 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	EIF2B2	P49770	351 aa	Known RBP	4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	ETV1	P50549	477 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	MLLT6	P55198	1093 aa	Predicted RBP	4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	SNX16	P57768	344 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	SNRPN	P63162	240 aa	Known RBP	4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	CAP1	Q01518	475 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	TFAP4	Q01664	338 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	GBE1	Q04446	702 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	GRIN1	Q05586	938 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	SOX4	Q06945	474 aa	Predicted RBP	4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	MOGS	Q13724	837 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	RRS1	Q15050	365 aa	Known RBP	4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	CYTH1	Q15438	398 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	STIL	Q15468	1287 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	PPP2R5E	Q16537	467 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	PTPRO	Q16827	1216 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	DDR2	Q16832	855 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	LONRF1	Q17RB8	773 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	MTERF2	Q49AM1	385 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	PPM1J	Q5JR12	505 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	TCHHL1	Q5QJ38	904 aa	Predicted RBP	4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	ARMC4	Q5T2S8	1044 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	C12orf60	Q5U649	245 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	METTL11B	Q5VVY1	283 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	OVOS1	Q6IE37	1185 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	FDX2	Q6P4F2	183 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	DRICH1	Q6PGQ1	229 aa	Predicted RBP	4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	SHQ1	Q6PI26	577 aa	Known RBP	4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	ANGPTL8	Q6UXH0	198 aa		4.54	□□□□□ -1.68
SNHG1-219	ENST00000542112	LINC00299	Q6ZSB3	139 aa		4.54	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms