RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 P2RX7Q99572 595 aaKnown RBP4.9□□□□□ -1.63
CD44-235ENST00000532339 TLR10Q9BXR5 811 aa4.9□□□□□ -1.63
CD44-235ENST00000532339 INTS13Q9NVM9 706 aa4.9□□□□□ -1.63
CD44-235ENST00000532339 PALLDQ8WX93 1383 aa4.9□□□□□ -1.63
CD44-235ENST00000532339 COL11A2P13942 1736 aaPredicted RBP4.89□□□□□ -1.63
CD44-235ENST00000532339 TAF1LQ8IZX4 1826 aa4.89□□□□□ -1.63
CD44-235ENST00000532339 CCDC151A5D8V7 595 aa4.89□□□□□ -1.63
CD44-235ENST00000532339 YY2O15391 372 aa4.89□□□□□ -1.63
CD44-235ENST00000532339 HTRA2O43464 458 aaPredicted RBP4.89□□□□□ -1.63
CD44-235ENST00000532339 SLC43A1O75387 559 aa4.89□□□□□ -1.63
CD44-235ENST00000532339 RPLP2P05387 115 aaKnown RBP4.89□□□□□ -1.63
CD44-235ENST00000532339 CD1AP06126 327 aa4.89□□□□□ -1.63
CD44-235ENST00000532339 SBK3P0C264 359 aa4.89□□□□□ -1.63
CD44-235ENST00000532339 MYBL2P10244 700 aa4.89□□□□□ -1.63
CD44-235ENST00000532339 LMO1P25800 156 aa4.89□□□□□ -1.63
CD44-235ENST00000532339 EPHB1P54762 984 aa4.89□□□□□ -1.63
CD44-235ENST00000532339 KRT85P78386 507 aa4.89□□□□□ -1.63
CD44-235ENST00000532339 NHLH1Q02575 133 aa4.89□□□□□ -1.63
CD44-235ENST00000532339 VWA1Q6PCB0 445 aa4.89□□□□□ -1.63
CD44-235ENST00000532339 ZNF365Q70YC5 407 aa4.89□□□□□ -1.63
CD44-235ENST00000532339 CCDC8Q9H0W5 538 aaPredicted RBP4.89□□□□□ -1.63
CD44-235ENST00000532339 MTMR10Q9NXD2 777 aa4.89□□□□□ -1.63
CD44-235ENST00000532339 CALCOCO1Q9P1Z2 691 aa4.89□□□□□ -1.63
CD44-235ENST00000532339 IPPQ9Y573 584 aa4.89□□□□□ -1.63
CD44-235ENST00000532339 DOT1LQ8TEK3 1739 aa4.89□□□□□ -1.63
CD44-235ENST00000532339 LAMB4A4D0S4 1761 aa4.88□□□□□ -1.63
CD44-235ENST00000532339 CCDC195A0A1B0GUA6 201 aa4.88□□□□□ -1.63
CD44-235ENST00000532339 GABRDO14764 452 aa4.88□□□□□ -1.63
CD44-235ENST00000532339 MPPED1O15442 326 aa4.88□□□□□ -1.63
CD44-235ENST00000532339 PROM1O43490 865 aa4.88□□□□□ -1.63
CD44-235ENST00000532339 PROP1O75360 226 aa4.88□□□□□ -1.63
CD44-235ENST00000532339 CDK4P11802 303 aa4.88□□□□□ -1.63
CD44-235ENST00000532339 EN2P19622 333 aaPredicted RBP4.88□□□□□ -1.63
CD44-235ENST00000532339 ANXA11P50995 505 aaKnown RBP4.88□□□□□ -1.63
CD44-235ENST00000532339 NEK2P51955 445 aa4.88□□□□□ -1.63
CD44-235ENST00000532339 ZNF280AP59817 542 aaPredicted RBP4.88□□□□□ -1.63
CD44-235ENST00000532339 KIF23Q02241 960 aaPredicted RBP4.88□□□□□ -1.63
CD44-235ENST00000532339 PIGFQ07326 219 aa4.88□□□□□ -1.63
CD44-235ENST00000532339 ITKQ08881 620 aa4.88□□□□□ -1.63
CD44-235ENST00000532339 DYRK1AQ13627 763 aa4.88□□□□□ -1.63
CD44-235ENST00000532339 IL10RAQ13651 578 aa4.88□□□□□ -1.63
CD44-235ENST00000532339 NFE2Q16621 373 aaPredicted RBP4.88□□□□□ -1.63
CD44-235ENST00000532339 ABCB5Q2M3G0 1257 aa4.88□□□□□ -1.63
CD44-235ENST00000532339 PREPLQ4J6C6 727 aaPredicted RBP4.88□□□□□ -1.63
CD44-235ENST00000532339 HSP90AB2PQ58FF8 381 aa4.88□□□□□ -1.63
CD44-235ENST00000532339 KIAA0895LQ68EN5 471 aa4.88□□□□□ -1.63
CD44-235ENST00000532339 GRASPQ7Z6J2 395 aaPredicted RBP4.88□□□□□ -1.63
CD44-235ENST00000532339 ZNF384Q8TF68 577 aa4.88□□□□□ -1.63
CD44-235ENST00000532339 CLPTM1LQ96KA5 538 aa4.88□□□□□ -1.63
CD44-235ENST00000532339 MRGPRX4Q96LA9 322 aa4.88□□□□□ -1.63
CD44-235ENST00000532339 KLHL32Q96NJ5 620 aa4.88□□□□□ -1.63
CD44-235ENST00000532339 SMAD5Q99717 465 aaKnown RBP4.88□□□□□ -1.63
CD44-235ENST00000532339 KLK15Q9H2R5 256 aa4.88□□□□□ -1.63
CD44-235ENST00000532339 MAN1C1Q9NR34 630 aa4.88□□□□□ -1.63
CD44-235ENST00000532339 CTTNBP2NLQ9P2B4 639 aa4.88□□□□□ -1.63
CD44-235ENST00000532339 TRHDEQ9UKU6 1024 aa4.88□□□□□ -1.63
CD44-235ENST00000532339 LIMCH1Q9UPQ0 1083 aa4.88□□□□□ -1.63
CD44-235ENST00000532339 LAMA2P24043 3122 aaKnown RBP4.88□□□□□ -1.63
CD44-235ENST00000532339 PIK3C2GO75747 1445 aa4.88□□□□□ -1.63
CD44-235ENST00000532339 KIAA0100Q14667 2235 aaKnown RBP4.87□□□□□ -1.63
CD44-235ENST00000532339 SHTN1A0MZ66 631 aa4.87□□□□□ -1.63
CD44-235ENST00000532339 CCDC154A6NI56 674 aa4.87□□□□□ -1.63
CD44-235ENST00000532339 PCDHGA12O60330 932 aa4.87□□□□□ -1.63
CD44-235ENST00000532339 C1QL1O75973 258 aa4.87□□□□□ -1.63
CD44-235ENST00000532339 MATN4O95460 622 aa4.87□□□□□ -1.63
CD44-235ENST00000532339 ANXA1P04083 346 aa4.87□□□□□ -1.63
CD44-235ENST00000532339 GYS1P13807 737 aa4.87□□□□□ -1.63
CD44-235ENST00000532339 EDNRBP24530 442 aa4.87□□□□□ -1.63
CD44-235ENST00000532339 TLE1Q04724 770 aa4.87□□□□□ -1.63
CD44-235ENST00000532339 C3orf36Q3SXR2 165 aa4.87□□□□□ -1.63
CD44-235ENST00000532339 AKNAD1Q5T1N1 836 aa4.87□□□□□ -1.63
CD44-235ENST00000532339 KAZNQ674X7 775 aa4.87□□□□□ -1.63
CD44-235ENST00000532339 KCNH5Q8NCM2 988 aa4.87□□□□□ -1.63
CD44-235ENST00000532339 TSR2Q969E8 191 aaKnown RBP4.87□□□□□ -1.63
CD44-235ENST00000532339 COA7Q96BR5 231 aa4.87□□□□□ -1.63
CD44-235ENST00000532339 FBXL20Q96IG2 436 aa4.87□□□□□ -1.63
CD44-235ENST00000532339 PGBD1Q96JS3 809 aa4.87□□□□□ -1.63
CD44-235ENST00000532339 TEKT5Q96M29 485 aa4.87□□□□□ -1.63
CD44-235ENST00000532339 UROC1Q96N76 676 aa4.87□□□□□ -1.63
CD44-235ENST00000532339 IMPG2Q9BZV3 1241 aa4.87□□□□□ -1.63
CD44-235ENST00000532339 TAOK3Q9H2K8 898 aa4.87□□□□□ -1.63
CD44-235ENST00000532339 PCDHGA9Q9Y5G4 932 aaKnown RBP4.87□□□□□ -1.63
CD44-235ENST00000532339 PCDHGA8Q9Y5G5 932 aa4.87□□□□□ -1.63
CD44-235ENST00000532339 PCDHGA7Q9Y5G6 932 aa4.87□□□□□ -1.63
CD44-235ENST00000532339 PCDHGA6Q9Y5G7 932 aa4.87□□□□□ -1.63
CD44-235ENST00000532339 PCDHGA3Q9Y5H0 932 aa4.87□□□□□ -1.63
CD44-235ENST00000532339 CFAP20Q9Y6A4 193 aaKnown RBP4.87□□□□□ -1.63
CD44-235ENST00000532339 HTTP42858 3142 aa4.87□□□□□ -1.63
CD44-235ENST00000532339 RBBP6Q7Z6E9 1792 aaKnown RBP4.86□□□□□ -1.63
CD44-235ENST00000532339 CCDC88AQ3V6T2 1871 aa4.86□□□□□ -1.63
CD44-235ENST00000532339 DICER1Q9UPY3 1922 aaKnown RBP4.86□□□□□ -1.63
CD44-235ENST00000532339 TOR1BO14657 336 aa4.86□□□□□ -1.63
CD44-235ENST00000532339 TSPAN6O43657 245 aa4.86□□□□□ -1.63
CD44-235ENST00000532339 SUN1O94901 812 aa4.86□□□□□ -1.63
CD44-235ENST00000532339 CELF2O95319 508 aaKnown RBP4.86□□□□□ -1.63
CD44-235ENST00000532339 GATA3P23771 443 aa4.86□□□□□ -1.63
CD44-235ENST00000532339 POU6F2P78424 691 aaPredicted RBP4.86□□□□□ -1.63
CD44-235ENST00000532339 HLXQ14774 488 aaPredicted RBP4.86□□□□□ -1.63
CD44-235ENST00000532339 PTPRRQ15256 657 aa4.86□□□□□ -1.63
CD44-235ENST00000532339 CD300EQ496F6 205 aaPredicted RBP4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms