RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 BEST1O76090 585 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 LCP1P13796 627 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 CTNNA2P26232 953 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 PAFAH1B1P43034 410 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 CDR1P51861 262 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 CTXN3Q4LDR2 81 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 CCDC181Q5TID7 509 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 ZNF280DQ6N043 979 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 OLFML1Q6UWY5 402 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 C4orf50Q6ZRC1 276 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 TMEM173Q86WV6 379 aaPredicted RBP22.13■■□□□ 1.13
VPS28-208ENST00000527797 FNIP1Q8TF40 1166 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 CD101Q93033 1021 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 SMOQ99835 787 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 HTATIP2Q9BUP3 242 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 UBXN6Q9BZV1 441 aa22.13■■□□□ 1.13
VPS28-208ENST00000527797 CARNS1A5YM72 827 aa22.12■■□□□ 1.13
VPS28-208ENST00000527797 OR6C75A6NL08 312 aa22.12■■□□□ 1.13
VPS28-208ENST00000527797 KCNT2Q6UVM3 1135 aa22.12■■□□□ 1.13
VPS28-208ENST00000527797 CPNE8Q86YQ8 564 aa22.12■■□□□ 1.13
VPS28-208ENST00000527797 SPATA2LQ8IUW3 424 aaPredicted RBP22.12■■□□□ 1.13
VPS28-208ENST00000527797 BCL7CQ8WUZ0 217 aaPredicted RBP22.12■■□□□ 1.13
VPS28-208ENST00000527797 ZNF558Q96NG5 402 aa22.12■■□□□ 1.13
VPS28-208ENST00000527797 LRRC4Q9HBW1 653 aa22.12■■□□□ 1.13
VPS28-208ENST00000527797 TSC2P49815 1807 aa22.12■■□□□ 1.13
VPS28-208ENST00000527797 FNDC1Q4ZHG4 1894 aaPredicted RBP22.12■■□□□ 1.13
VPS28-208ENST00000527797 CTAGE15A4D2H0 777 aa22.11■■□□□ 1.13
VPS28-208ENST00000527797 H7C4K7 107 aa22.11■■□□□ 1.13
VPS28-208ENST00000527797 CTAGE8P0CG41 777 aa22.11■■□□□ 1.13
VPS28-208ENST00000527797 PSMA2P25787 234 aa22.11■■□□□ 1.13
VPS28-208ENST00000527797 CTNNA1P35221 906 aaKnown RBP22.11■■□□□ 1.13
VPS28-208ENST00000527797 SCNN1AP37088 669 aa22.11■■□□□ 1.13
VPS28-208ENST00000527797 OGDHQ02218 1023 aa22.11■■□□□ 1.13
VPS28-208ENST00000527797 CFAP221Q4G0U5 840 aa22.11■■□□□ 1.13
VPS28-208ENST00000527797 PSRC1Q6PGN9 363 aaPredicted RBP22.11■■□□□ 1.13
VPS28-208ENST00000527797 CTAGE6Q86UF2 777 aa22.11■■□□□ 1.13
VPS28-208ENST00000527797 CTAGE4Q8IX94 777 aa22.11■■□□□ 1.13
VPS28-208ENST00000527797 IGSF21Q96ID5 467 aa22.11■■□□□ 1.13
VPS28-208ENST00000527797 YME1L1Q96TA2 773 aa22.11■■□□□ 1.13
VPS28-208ENST00000527797 TTPALQ9BTX7 342 aa22.11■■□□□ 1.13
VPS28-208ENST00000527797 CSNK1G1Q9HCP0 422 aa22.11■■□□□ 1.13
VPS28-208ENST00000527797 TMEM59LQ9UK28 342 aa22.11■■□□□ 1.13
VPS28-208ENST00000527797 USTQ9Y2C2 406 aa22.11■■□□□ 1.13
VPS28-208ENST00000527797 PCDHA3Q9Y5H8 950 aa22.11■■□□□ 1.13
VPS28-208ENST00000527797 CEP104O60308 925 aa22.1■■□□□ 1.13
VPS28-208ENST00000527797 OR4Q2P0C623 313 aa22.1■■□□□ 1.13
VPS28-208ENST00000527797 LAG3P18627 525 aa22.1■■□□□ 1.13
VPS28-208ENST00000527797 BDNFP23560 247 aa22.1■■□□□ 1.13
VPS28-208ENST00000527797 RNASE9P60153 205 aaKnown RBP22.1■■□□□ 1.13
VPS28-208ENST00000527797 ZNF252P-AS1Q0IIN9 211 aa22.1■■□□□ 1.13
VPS28-208ENST00000527797 SLC39A12Q504Y0 691 aa22.1■■□□□ 1.13
VPS28-208ENST00000527797 ANKS3Q6ZW76 656 aa22.1■■□□□ 1.13
VPS28-208ENST00000527797 EMC1Q8N766 993 aa22.1■■□□□ 1.13
VPS28-208ENST00000527797 NIPA2Q8N8Q9 360 aa22.1■■□□□ 1.13
VPS28-208ENST00000527797 KRT35Q92764 455 aa22.1■■□□□ 1.13
VPS28-208ENST00000527797 B3GALT6Q96L58 329 aa22.1■■□□□ 1.13
VPS28-208ENST00000527797 KCNK16Q96T55 309 aa22.1■■□□□ 1.13
VPS28-208ENST00000527797 OXCT2Q9BYC2 517 aaPredicted RBP22.1■■□□□ 1.13
VPS28-208ENST00000527797 CARD9Q9H257 536 aa22.1■■□□□ 1.13
VPS28-208ENST00000527797 SBDSQ9Y3A5 250 aaKnown RBP eCLIP22.1■■□□□ 1.13
VPS28-208ENST00000527797 PEX5P50542 639 aa22.09■■□□□ 1.13
VPS28-208ENST00000527797 NFE2Q16621 373 aaPredicted RBP22.09■■□□□ 1.13
VPS28-208ENST00000527797 TMEM240Q5SV17 173 aa22.09■■□□□ 1.13
VPS28-208ENST00000527797 CC2D1AQ6P1N0 951 aaPredicted RBP22.09■■□□□ 1.13
VPS28-208ENST00000527797 TAS1R1Q7RTX1 841 aa22.09■■□□□ 1.13
VPS28-208ENST00000527797 SIX6OS1Q8N1H7 587 aa22.09■■□□□ 1.13
VPS28-208ENST00000527797 LRRN4CLQ8ND94 238 aa22.09■■□□□ 1.13
VPS28-208ENST00000527797 ZMIZ2Q8NF64 920 aa22.09■■□□□ 1.13
VPS28-208ENST00000527797 ALG3Q92685 438 aa22.09■■□□□ 1.13
VPS28-208ENST00000527797 PIWIL1Q96J94 861 aaKnown RBP22.09■■□□□ 1.13
VPS28-208ENST00000527797 RHOBTB2Q9BYZ6 727 aa22.09■■□□□ 1.13
VPS28-208ENST00000527797 DMAP1Q9NPF5 467 aaPredicted RBP22.09■■□□□ 1.13
VPS28-208ENST00000527797 MRPL42Q9Y6G3 142 aaKnown RBP22.09■■□□□ 1.13
VPS28-208ENST00000527797 F8VP50 259 aa22.09■■□□□ 1.13
VPS28-208ENST00000527797 PDE2AO00408 941 aaPredicted RBP22.09■■□□□ 1.13
VPS28-208ENST00000527797 EFEMP2O95967 443 aa22.09■■□□□ 1.13
VPS28-208ENST00000527797 SYN1P17600 705 aa22.09■■□□□ 1.13
VPS28-208ENST00000527797 GPD1P21695 349 aa22.09■■□□□ 1.13
VPS28-208ENST00000527797 GTF2F1P35269 517 aaKnown RBP eCLIP22.09■■□□□ 1.13
VPS28-208ENST00000527797 SSR1P43307 286 aaKnown RBP22.09■■□□□ 1.13
VPS28-208ENST00000527797 CACNA2D1P54289 1103 aa22.09■■□□□ 1.13
VPS28-208ENST00000527797 RWDD2BP57060 319 aa22.09■■□□□ 1.13
VPS28-208ENST00000527797 ADIGQ0VDE8 80 aa22.09■■□□□ 1.13
VPS28-208ENST00000527797 ACAP1Q15027 740 aa22.09■■□□□ 1.13
VPS28-208ENST00000527797 USP41Q3LFD5 358 aa22.09■■□□□ 1.13
VPS28-208ENST00000527797 EFHC1Q5JVL4 640 aa22.09■■□□□ 1.13
VPS28-208ENST00000527797 RTP2Q5QGT7 225 aa22.09■■□□□ 1.13
VPS28-208ENST00000527797 SLC26A9Q7LBE3 791 aa22.09■■□□□ 1.13
VPS28-208ENST00000527797 RHOT1Q8IXI2 618 aa22.09■■□□□ 1.13
VPS28-208ENST00000527797 MS4A14Q96JA4 679 aa22.09■■□□□ 1.13
VPS28-208ENST00000527797 RPGRIP1Q96KN7 1286 aa22.09■■□□□ 1.13
VPS28-208ENST00000527797 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.09■■□□□ 1.134e-7■■■■□ 21.8
VPS28-208ENST00000527797 COL4A6Q14031 1691 aa22.09■■□□□ 1.13
VPS28-208ENST00000527797 UQCRHLA0A096LP55 91 aa22.08■■□□□ 1.13
VPS28-208ENST00000527797 EFCAB8A8MWE9 144 aa22.08■■□□□ 1.13
VPS28-208ENST00000527797 GRAP2O75791 330 aa22.08■■□□□ 1.13
VPS28-208ENST00000527797 FBXO21O94952 628 aa22.08■■□□□ 1.13
VPS28-208ENST00000527797 UQCRHP07919 91 aa22.08■■□□□ 1.13
VPS28-208ENST00000527797 TKTL1P51854 596 aa22.08■■□□□ 1.13
VPS28-208ENST00000527797 ZNF143P52747 638 aaPredicted RBP22.08■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms