RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 CHKBQ9Y259 395 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 ITM2BQ9Y287 266 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 CA12O43570 354 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 GYPCP04921 128 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 BTN3A2P78410 334 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 EXOSC10Q01780 885 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 DNAJC3Q13217 504 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 SLC29A2Q14542 456 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 LBRQ14739 615 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 NCF4Q15080 339 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 STXBP2Q15833 593 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 DEFB115Q30KQ5 88 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 C6orf10Q5SRN2 563 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 CWF19L1Q69YN2 538 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 ARMCX2Q7L311 632 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 CYFIP1Q7L576 1253 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 SLC35G2Q8TBE7 412 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 GAS2L1Q99501 681 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 FAM118BQ9BPY3 351 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 PACSIN1Q9BY11 444 aa9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 EML4Q9HC35 981 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 RSL24D1Q9UHA3 163 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-218ENST00000513024 A0A0G2JLW4 131 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 FAM205CA6NFA0 338 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 TRIM49D1C9J1S8 452 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 TPST1O60507 370 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 SRGNP10124 158 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 GNA15P30679 374 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 GCLCP48506 637 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 ROR1Q01973 937 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 TAF2Q6P1X5 1199 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 ZBTB49Q6ZSB9 765 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 STOX1Q6ZVD7 989 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 RNF139Q8WU17 664 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 TMEM79Q9BSE2 394 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 EPB41L4AQ9HCS5 686 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 MYRFQ9Y2G1 1151 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 PFASO15067 1338 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 PSMD14O00487 310 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 FKBP9O95302 570 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 TDP2O95551 362 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 GGPS1O95749 300 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 PSAPP07602 524 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 SDC4P31431 198 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 STAT3P40763 770 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 IST1P53990 364 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 ACTR2P61160 394 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 TRAF3Q13114 568 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 SLFN12LQ6IEE8 588 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 RASSF6Q6ZTQ3 369 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 FKBP9P1Q75LS8 142 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 SLC44A5Q8NCS7 719 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 OR6P1Q8NGX9 317 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 LRRC20Q8TCA0 184 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 CRAMP1Q96RY5 1269 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 L2HGDHQ9H9P8 463 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 ZNF224Q9NZL3 707 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 SRP68Q9UHB9 627 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 IP6K2Q9UHH9 426 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 PCDHA6Q9UN73 950 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 PCDHA8Q9Y5H6 950 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 SNX13Q9Y5W8 968 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 EMSYQ7Z589 1322 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 CYP26A1O43174 497 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 H2AFXP16104 143 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 PSMB9P28065 219 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 VBP1P61758 197 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 ATP2C1P98194 919 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 TNFAIP2Q03169 654 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 ZC2HC1CQ53FD0 456 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 COBLL1Q53SF7 1204 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 AKAP14Q86UN6 197 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 JAMLQ86YT9 394 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 FUKQ8N0W3 1084 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 PGBD3Q8N328 593 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 POC5Q8NA72 575 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 SLC30A5Q8TAD4 765 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 PGBD4Q96DM1 585 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 SIPA1Q96FS4 1042 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 SHCBP1LQ9BZQ2 653 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 TSR3Q9UJK0 312 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 KANSL1LA0AUZ9 987 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 STMND1H3BQB6 276 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 EIF3DO15371 548 aaKnown RBP eCLIP9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 ZNF23P17027 643 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 GTF2H1P32780 548 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 CDH6P55285 790 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 ST3GAL1Q11201 340 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 EIF2B5Q13144 721 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 PERM1Q5SV97 790 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 RDM1Q8NG50 284 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 HPS1Q92902 700 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 KCNB2Q92953 911 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 SH3KBP1Q96B97 665 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 RMDN1Q96DB5 314 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 AGPAT1Q99943 283 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 UBXN6Q9BZV1 441 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 TRIM9Q9C026 710 aa9.04□□□□□ -0.96
LIMCH1-218ENST00000513024 TK2O00142 265 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms