RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 SLC20A1Q8WUM9 679 aa31.33■■■□□ 2.61
LIMCH1-211ENST00000509638 HLA-CQ95604 372 aa31.33■■■□□ 2.61
LIMCH1-211ENST00000509638 PAPLNO95428 1278 aa31.32■■■□□ 2.6
LIMCH1-211ENST00000509638 SLC8A3P57103 927 aa31.32■■■□□ 2.6
LIMCH1-211ENST00000509638 TBX2Q13207 712 aaPredicted RBP31.32■■■□□ 2.6
LIMCH1-211ENST00000509638 PKDCCQ504Y2 493 aa31.32■■■□□ 2.6
LIMCH1-211ENST00000509638 DDX1Q92499 740 aaKnown RBP31.32■■■□□ 2.6
LIMCH1-211ENST00000509638 SMG7Q92540 1137 aaKnown RBP31.32■■■□□ 2.6
LIMCH1-211ENST00000509638 NUCKS1Q9H1E3 243 aaKnown RBP31.32■■■□□ 2.6
LIMCH1-211ENST00000509638 AIPL1Q9NZN9 384 aa31.32■■■□□ 2.6
LIMCH1-211ENST00000509638 CDH22Q9UJ99 828 aa31.32■■■□□ 2.6
LIMCH1-211ENST00000509638 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP31.31■■■□□ 2.6
LIMCH1-211ENST00000509638 POU2F2P09086 479 aa31.31■■■□□ 2.6
LIMCH1-211ENST00000509638 CCDC172P0C7W6 258 aa31.31■■■□□ 2.6
LIMCH1-211ENST00000509638 SETSIPP0DME0 302 aa31.31■■■□□ 2.6
LIMCH1-211ENST00000509638 KRT9P35527 623 aa31.31■■■□□ 2.6
LIMCH1-211ENST00000509638 PDE4CQ08493 712 aa31.31■■■□□ 2.6
LIMCH1-211ENST00000509638 MEA1Q16626 185 aa31.31■■■□□ 2.6
LIMCH1-211ENST00000509638 DENND1BQ6P3S1 775 aa31.31■■■□□ 2.6
LIMCH1-211ENST00000509638 PASD1Q8IV76 773 aa31.31■■■□□ 2.6
LIMCH1-211ENST00000509638 SMRP1Q8NCR6 262 aa31.31■■■□□ 2.6
LIMCH1-211ENST00000509638 SECISBP2LQ93073 1101 aaKnown RBP31.31■■■□□ 2.6
LIMCH1-211ENST00000509638 SPATA17Q96L03 361 aa31.31■■■□□ 2.6
LIMCH1-211ENST00000509638 PCDHGC3Q9UN70 934 aa31.31■■■□□ 2.6
LIMCH1-211ENST00000509638 MFAP3LO75121 409 aa31.3■■■□□ 2.6
LIMCH1-211ENST00000509638 CDC25BP30305 580 aa31.3■■■□□ 2.6
LIMCH1-211ENST00000509638 IRF2BP2Q7Z5L9 587 aa31.3■■■□□ 2.6
LIMCH1-211ENST00000509638 ITIH5Q86UX2 942 aa31.3■■■□□ 2.6
LIMCH1-211ENST00000509638 PSMG2Q969U7 264 aa31.3■■■□□ 2.6
LIMCH1-211ENST00000509638 PIDD1Q9HB75 910 aa31.3■■■□□ 2.6
LIMCH1-211ENST00000509638 HCFC1R1Q9NWW0 138 aa31.3■■■□□ 2.6
LIMCH1-211ENST00000509638 CD207Q9UJ71 328 aa31.3■■■□□ 2.6
LIMCH1-211ENST00000509638 DENND4AQ7Z401 1863 aa31.3■■■□□ 2.6
LIMCH1-211ENST00000509638 TULP2O00295 520 aa31.3■■■□□ 2.6
LIMCH1-211ENST00000509638 MMEP08473 750 aa31.3■■■□□ 2.6
LIMCH1-211ENST00000509638 ITIH3Q06033 890 aa31.3■■■□□ 2.6
LIMCH1-211ENST00000509638 GOLGA8FQ08AF8 430 aa31.3■■■□□ 2.6
LIMCH1-211ENST00000509638 GOLGA8DPQ0D2H9 430 aa31.3■■■□□ 2.6
LIMCH1-211ENST00000509638 MTMR3Q13615 1198 aa31.3■■■□□ 2.6
LIMCH1-211ENST00000509638 CEP295NLQ96MC4 621 aa31.3■■■□□ 2.6
LIMCH1-211ENST00000509638 ZNF512Q96ME7 567 aaPredicted RBP31.3■■■□□ 2.6
LIMCH1-211ENST00000509638 S1PR5Q9H228 398 aa31.3■■■□□ 2.6
LIMCH1-211ENST00000509638 ADAM7Q9H2U9 754 aa31.3■■■□□ 2.6
LIMCH1-211ENST00000509638 ASB3Q9Y575 518 aa31.3■■■□□ 2.6
LIMCH1-211ENST00000509638 NOTCH4Q99466 2003 aa31.3■■■□□ 2.6
LIMCH1-211ENST00000509638 OBSL1O75147 1896 aa31.29■■■□□ 2.6
LIMCH1-211ENST00000509638 SLC38A8A6NNN8 435 aa31.29■■■□□ 2.6
LIMCH1-211ENST00000509638 XPO1O14980 1071 aaKnown RBP31.29■■■□□ 2.6
LIMCH1-211ENST00000509638 SLC5A3P53794 718 aa31.29■■■□□ 2.6
LIMCH1-211ENST00000509638 CDR2Q01850 454 aa31.29■■■□□ 2.6
LIMCH1-211ENST00000509638 DENND5BQ6ZUT9 1274 aa31.29■■■□□ 2.6
LIMCH1-211ENST00000509638 GPRIN1Q7Z2K8 1008 aa31.29■■■□□ 2.6
LIMCH1-211ENST00000509638 GPR149Q86SP6 731 aa31.29■■■□□ 2.6
LIMCH1-211ENST00000509638 ZNF677Q86XU0 584 aa31.29■■■□□ 2.6
LIMCH1-211ENST00000509638 DRC7Q8IY82 874 aa31.29■■■□□ 2.6
LIMCH1-211ENST00000509638 SYN2Q92777 582 aaPredicted RBP31.29■■■□□ 2.6
LIMCH1-211ENST00000509638 PDCL3Q9H2J4 239 aa31.29■■■□□ 2.6
LIMCH1-211ENST00000509638 PNPLA8Q9NP80 782 aa31.29■■■□□ 2.6
LIMCH1-211ENST00000509638 HHLA1C9JL84 531 aa31.28■■■□□ 2.6
LIMCH1-211ENST00000509638 TAF12Q16514 161 aa31.28■■■□□ 2.6
LIMCH1-211ENST00000509638 CES5AQ6NT32 575 aa31.28■■■□□ 2.6
LIMCH1-211ENST00000509638 PIGZQ86VD9 579 aa31.28■■■□□ 2.6
LIMCH1-211ENST00000509638 CORO1BQ9BR76 489 aa31.28■■■□□ 2.6
LIMCH1-211ENST00000509638 COG5Q9UP83 839 aa31.28■■■□□ 2.6
LIMCH1-211ENST00000509638 UNC80Q8N2C7 3258 aa31.27■■■□□ 2.6
LIMCH1-211ENST00000509638 CSH1P0DML2 217 aa31.27■■■□□ 2.6
LIMCH1-211ENST00000509638 CSH2P0DML3 217 aa31.27■■■□□ 2.6
LIMCH1-211ENST00000509638 PLA2G4AP47712 749 aa31.27■■■□□ 2.6
LIMCH1-211ENST00000509638 ADKP55263 362 aaKnown RBP31.27■■■□□ 2.6
LIMCH1-211ENST00000509638 GSE1Q14687 1217 aa31.27■■■□□ 2.6
LIMCH1-211ENST00000509638 GRASPQ7Z6J2 395 aaPredicted RBP31.27■■■□□ 2.6
LIMCH1-211ENST00000509638 DNAJB7Q7Z6W7 309 aaPredicted RBP31.27■■■□□ 2.6
LIMCH1-211ENST00000509638 CNGA4Q8IV77 575 aa31.27■■■□□ 2.6
LIMCH1-211ENST00000509638 DNAJC7Q99615 494 aa31.27■■■□□ 2.6
LIMCH1-211ENST00000509638 PRDM6Q9NQX0 595 aa31.27■■■□□ 2.6
LIMCH1-211ENST00000509638 ASAH2Q9NR71 780 aa31.27■■■□□ 2.6
LIMCH1-211ENST00000509638 ABHD10Q9NUJ1 306 aa31.27■■■□□ 2.6
LIMCH1-211ENST00000509638 MAGED2Q9UNF1 606 aaPredicted RBP31.27■■■□□ 2.6
LIMCH1-211ENST00000509638 CEP83Q9Y592 693 aa31.27■■■□□ 2.6
LIMCH1-211ENST00000509638 TNFRSF10BO14763 440 aa31.26■■■□□ 2.6
LIMCH1-211ENST00000509638 PRKCIP41743 596 aa31.26■■■□□ 2.6
LIMCH1-211ENST00000509638 GPD2P43304 727 aa31.26■■■□□ 2.6
LIMCH1-211ENST00000509638 MRE11P49959 708 aa31.26■■■□□ 2.6
LIMCH1-211ENST00000509638 USP46P62068 366 aa31.26■■■□□ 2.6
LIMCH1-211ENST00000509638 FMO1Q01740 532 aa31.26■■■□□ 2.6
LIMCH1-211ENST00000509638 KLHL30Q0D2K2 578 aa31.26■■■□□ 2.6
LIMCH1-211ENST00000509638 IFRD2Q12894 506 aaPredicted RBP31.26■■■□□ 2.6
LIMCH1-211ENST00000509638 CYP26C1Q6V0L0 522 aa31.26■■■□□ 2.6
LIMCH1-211ENST00000509638 ARHGAP30Q7Z6I6 1101 aaPredicted RBP31.26■■■□□ 2.6
LIMCH1-211ENST00000509638 NUP93Q8N1F7 819 aa31.26■■■□□ 2.6
LIMCH1-211ENST00000509638 DNMT3BQ9UBC3 853 aaKnown RBP31.26■■■□□ 2.6
LIMCH1-211ENST00000509638 AKR1B15C9JRZ8 316 aaPredicted RBP31.26■■■□□ 2.59
LIMCH1-211ENST00000509638 HMGA1P17096 107 aaKnown RBP31.26■■■□□ 2.59
LIMCH1-211ENST00000509638 CHRNB2P17787 502 aa31.26■■■□□ 2.59
LIMCH1-211ENST00000509638 TMC8Q8IU68 726 aa31.26■■■□□ 2.59
LIMCH1-211ENST00000509638 C1orf131Q8NDD1 294 aaKnown RBP31.26■■■□□ 2.59
LIMCH1-211ENST00000509638 SCAMP5Q8TAC9 235 aa31.26■■■□□ 2.59
LIMCH1-211ENST00000509638 SLC35F5Q8WV83 523 aa31.26■■■□□ 2.59
LIMCH1-211ENST00000509638 HAUS4Q9H6D7 363 aa31.26■■■□□ 2.59
LIMCH1-211ENST00000509638 ZNF334Q9HCZ1 680 aaPredicted RBP31.26■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms