RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 ZNF558Q96NG5 402 aa8.78□□□□□ -1
USP54-215ENST00000497106 MRPL45Q9BRJ2 306 aaKnown RBP8.78□□□□□ -1
USP54-215ENST00000497106 DUSP16Q9BY84 665 aa8.78□□□□□ -1
USP54-215ENST00000497106 PARD6BQ9BYG5 372 aa8.78□□□□□ -1
USP54-215ENST00000497106 OSBPL8Q9BZF1 889 aa8.78□□□□□ -1
USP54-215ENST00000497106 GPR88Q9GZN0 384 aa8.78□□□□□ -1
USP54-215ENST00000497106 CDHR5Q9HBB8 845 aa8.78□□□□□ -1
USP54-215ENST00000497106 OLA1Q9NTK5 396 aaKnown RBP8.78□□□□□ -1
USP54-215ENST00000497106 PACSIN2Q9UNF0 486 aaPredicted RBP8.78□□□□□ -1
USP54-215ENST00000497106 STXBP5LQ9Y2K9 1186 aa8.78□□□□□ -1
USP54-215ENST00000497106 RCCD1A6NED2 376 aa8.78□□□□□ -1
USP54-215ENST00000497106 H7C0C1 242 aa8.78□□□□□ -1
USP54-215ENST00000497106 ATP5OP48047 213 aa8.78□□□□□ -1
USP54-215ENST00000497106 KPNA1P52294 538 aaPredicted RBP8.78□□□□□ -1
USP54-215ENST00000497106 CDO1Q16878 200 aa8.78□□□□□ -1
USP54-215ENST00000497106 UBXN11Q5T124 520 aa8.78□□□□□ -1
USP54-215ENST00000497106 SMG8Q8ND04 991 aaKnown RBP8.78□□□□□ -1
USP54-215ENST00000497106 SLC2A14Q8TDB8 520 aa8.78□□□□□ -1
USP54-215ENST00000497106 PPP1R13LQ8WUF5 828 aa8.78□□□□□ -1
USP54-215ENST00000497106 IRGQQ8WZA9 623 aa8.78□□□□□ -1
USP54-215ENST00000497106 HES6Q96HZ4 224 aa8.78□□□□□ -1
USP54-215ENST00000497106 TAS2R14Q9NYV8 317 aa8.78□□□□□ -1
USP54-215ENST00000497106 TTLL13PA6NNM8 815 aa8.78□□□□□ -1
USP54-215ENST00000497106 A6NNZ2 444 aa8.78□□□□□ -1
USP54-215ENST00000497106 APOL1O14791 398 aa8.78□□□□□ -1
USP54-215ENST00000497106 AIF1P55008 147 aa8.78□□□□□ -1
USP54-215ENST00000497106 MGAT3Q09327 533 aa8.78□□□□□ -1
USP54-215ENST00000497106 TUBB8Q3ZCM7 444 aa8.78□□□□□ -1
USP54-215ENST00000497106 DEFB128Q7Z7B8 93 aa8.78□□□□□ -1
USP54-215ENST00000497106 SLFN11Q7Z7L1 901 aa8.78□□□□□ -1
USP54-215ENST00000497106 ARFGAP2Q8N6H7 521 aa8.78□□□□□ -1
USP54-215ENST00000497106 PTPRJQ12913 1337 aa8.77□□□□□ -1
USP54-215ENST00000497106 SMCHD1A6NHR9 2005 aa8.77□□□□□ -1
USP54-215ENST00000497106 PCK1P35558 622 aa8.77□□□□□ -1
USP54-215ENST00000497106 CDH6P55285 790 aa8.77□□□□□ -1
USP54-215ENST00000497106 DEUP1Q05D60 604 aa8.77□□□□□ -1
USP54-215ENST00000497106 SLC20A2Q08357 652 aa8.77□□□□□ -1
USP54-215ENST00000497106 LRRC31Q6UY01 552 aa8.77□□□□□ -1
USP54-215ENST00000497106 STKLD1Q8NE28 680 aa8.77□□□□□ -1
USP54-215ENST00000497106 P3H4Q92791 437 aa8.77□□□□□ -1
USP54-215ENST00000497106 PPP1R10Q96QC0 940 aaKnown RBP8.77□□□□□ -1
USP54-215ENST00000497106 AP1M1Q9BXS5 423 aa8.77□□□□□ -1
USP54-215ENST00000497106 EPB41L5Q9HCM4 733 aa8.77□□□□□ -1
USP54-215ENST00000497106 TFR2Q9UP52 801 aa8.77□□□□□ -1
USP54-215ENST00000497106 DAB1O75553 588 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 SSTR3P32745 418 aaPredicted RBP8.77□□□□□ -1.01
USP54-215ENST00000497106 ZNF143P52747 638 aaPredicted RBP8.77□□□□□ -1.01
USP54-215ENST00000497106 AMPD2Q01433 879 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 IFRD2Q12894 506 aaPredicted RBP8.77□□□□□ -1.01
USP54-215ENST00000497106 VSTM1Q6UX27 236 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 BBS5Q8N3I7 341 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 SUSD3Q96L08 255 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 PPP1R2P1Q96PQ5 205 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 SLITRK1Q96PX8 696 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 YME1L1Q96TA2 773 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 CNGB3Q9NQW8 809 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 DPP7Q9UHL4 492 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 RWDD3Q9Y3V2 267 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 IKBKGQ9Y6K9 419 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 FAM189A1O60320 539 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 IQCF3P0C7M6 154 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 CYP2C18P33260 490 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 PHBP35232 272 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 TUFMP49411 452 aaKnown RBP8.77□□□□□ -1.01
USP54-215ENST00000497106 PRPSAP1Q14558 356 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 EIF1ADQ8N9N8 165 aaKnown RBP8.77□□□□□ -1.01
USP54-215ENST00000497106 MYCBPAPQ8TBZ2 947 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 COMMD8Q9NX08 183 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 OGDHLQ9ULD0 1010 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 KAT6AQ92794 2004 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 SGK1O00141 431 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 UPP2O95045 317 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 ZBED1O96006 694 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 EDN1P05305 212 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 PSEN1P49768 467 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 TKTL1P51854 596 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 ZNF211Q13398 564 aaPredicted RBP8.77□□□□□ -1.01
USP54-215ENST00000497106 BTG3Q14201 252 aaPredicted RBP8.77□□□□□ -1.01
USP54-215ENST00000497106 XKR4Q5GH76 650 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 INTS6LQ5JSJ4 861 aaKnown RBP8.77□□□□□ -1.01
USP54-215ENST00000497106 DARS2Q6PI48 645 aaKnown RBP8.77□□□□□ -1.01
USP54-215ENST00000497106 CCDC137Q6PK04 289 aaKnown RBP8.77□□□□□ -1.01
USP54-215ENST00000497106 SLC39A5Q6ZMH5 540 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 FAM35AQ86V20 835 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 ZNF354CQ86Y25 554 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 PAF1Q8N7H5 531 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 UBLCP1Q8WVY7 318 aaPredicted RBP8.77□□□□□ -1.01
USP54-215ENST00000497106 RXFP2Q8WXD0 754 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 RNF25Q96BH1 459 aaPredicted RBP8.77□□□□□ -1.01
USP54-215ENST00000497106 UBXN6Q9BZV1 441 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 L1RE1Q9UN81 338 aa8.77□□□□□ -1.01
USP54-215ENST00000497106 CTGFP29279 349 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 BCAR1P56945 870 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 ORC1Q13415 861 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 TFDP3Q5H9I0 405 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 FAM171A1Q5VUB5 890 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 LRRC57Q8N9N7 239 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 COG1Q8WTW3 980 aa8.76□□□□□ -1.01
USP54-215ENST00000497106 DDX1Q92499 740 aaKnown RBP8.76□□□□□ -1.01
USP54-215ENST00000497106 OGFRQ9NZT2 677 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms