RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 SERTAD1Q9UHV2 236 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 HPSEQ9Y251 543 aa12.94□□□□□ -0.34
SQSTM1-207ENST00000481335 A8MXQ7 604 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 PRR5-ARHGAP8B1AHC4 643 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 CHURC1-FNTBB4DL54 471 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 K7ESF4 209 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 IKBKBO14920 756 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 HCRTO43612 131 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 FOXD2O60548 495 aaPredicted RBP12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 PHACTR2O75167 634 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 ATP2C2O75185 946 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 PDGFRBP09619 1106 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 P4HA1P13674 534 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 PTPN1P18031 435 aaKnown RBP12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 TRIM21P19474 475 aaKnown RBP12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 CASP1P29466 404 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 IFNAR2P48551 515 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 CDR1P51861 262 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 ARHGAP8P85298 464 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 LMNB2Q03252 620 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 STK4Q13043 487 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 NR1H3Q13133 447 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 NFIL3Q16649 462 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 ZNF699Q32M78 642 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 KMT5BQ4FZB7 885 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 ZNF667Q5HYK9 610 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 MDH1BQ5I0G3 518 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 WDR44Q5JSH3 913 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 Q6ZS52 159 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 GPIHBP1Q8IV16 184 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 B3GALNT2Q8NCR0 500 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 PDZD8Q8NEN9 1154 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 TMC2Q8TDI7 906 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 ZNF516Q92618 1163 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 TAF4BQ92750 862 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 CCDC34Q96HJ3 373 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 SLITRK1Q96PX8 696 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 MRPL45Q9BRJ2 306 aaKnown RBP12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 SCAND2PQ9GZW5 306 aaPredicted RBP12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 KCTD10Q9H3F6 313 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 ECT2Q9H8V3 914 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 TRPC7Q9HCX4 862 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 RBM12Q9NTZ6 932 aaKnown RBP12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 DUS2Q9NX74 493 aaKnown RBP12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 DLL3Q9NYJ7 618 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 TRAF3IP3Q9Y228 551 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 ATG2BQ96BY7 2078 aa12.93□□□□□ -0.34
SQSTM1-207ENST00000481335 LRRIQ3A6PVS8 624 aaPredicted RBP12.92□□□□□ -0.34
SQSTM1-207ENST00000481335 F8VP50 259 aa12.92□□□□□ -0.34
SQSTM1-207ENST00000481335 CALUO43852 315 aaPredicted RBP12.92□□□□□ -0.34
SQSTM1-207ENST00000481335 RTN3O95197 1032 aaPredicted RBP12.92□□□□□ -0.34
SQSTM1-207ENST00000481335 NFATC1O95644 943 aa12.92□□□□□ -0.34
SQSTM1-207ENST00000481335 OLFM2O95897 454 aa12.92□□□□□ -0.34
SQSTM1-207ENST00000481335 RPN1P04843 607 aaKnown RBP12.92□□□□□ -0.34
SQSTM1-207ENST00000481335 RETP07949 1114 aa12.92□□□□□ -0.34
SQSTM1-207ENST00000481335 HDCP19113 662 aa12.92□□□□□ -0.34
SQSTM1-207ENST00000481335 SYKP43405 635 aa12.92□□□□□ -0.34
SQSTM1-207ENST00000481335 MYL6P60660 151 aa12.92□□□□□ -0.34
SQSTM1-207ENST00000481335 SLC7A9P82251 487 aa12.92□□□□□ -0.34
SQSTM1-207ENST00000481335 BIRC3Q13489 604 aa12.92□□□□□ -0.34
SQSTM1-207ENST00000481335 NCOA4Q13772 614 aa12.92□□□□□ -0.34
SQSTM1-207ENST00000481335 CCDC142Q17RM4 750 aa12.92□□□□□ -0.34
SQSTM1-207ENST00000481335 ZACNQ401N2 412 aa12.92□□□□□ -0.34
SQSTM1-207ENST00000481335 TDRD10Q5VZ19 366 aaKnown RBP12.92□□□□□ -0.34
SQSTM1-207ENST00000481335 WDR5BQ86VZ2 330 aa12.92□□□□□ -0.34
SQSTM1-207ENST00000481335 DDX42Q86XP3 938 aaKnown RBP eCLIP12.92□□□□□ -0.342e-11■□□□□ 10.2
SQSTM1-207ENST00000481335 STKLD1Q8NE28 680 aa12.92□□□□□ -0.34
SQSTM1-207ENST00000481335 RIN3Q8TB24 985 aa12.92□□□□□ -0.34
SQSTM1-207ENST00000481335 P2RY13Q9BPV8 354 aa12.92□□□□□ -0.34
SQSTM1-207ENST00000481335 COMMD8Q9NX08 183 aa12.92□□□□□ -0.34
SQSTM1-207ENST00000481335 FRMD4BQ9Y2L6 1034 aa12.92□□□□□ -0.34
SQSTM1-207ENST00000481335 EML5Q05BV3 1969 aa12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 A0A1B0GVL5 298 aa12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 A0A1W2PQ27 194 aa12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 A0A1W2PQ64 194 aa12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 A0A1W2PQD8 194 aa12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 C2orf78A6NCI8 922 aa12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 ZNF840PA6NDX5 716 aa12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 OTOL1A6NHN0 477 aaPredicted RBP12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 SLC9A3R1O14745 358 aaPredicted RBP12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 AKAP3O75969 853 aa12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 RHOBTB3O94955 611 aa12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 C4BPAP04003 597 aaKnown RBP12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 NR3C1P04150 777 aa12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 GJA4P35212 333 aa12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 TUBP50607 506 aa12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 SIM2Q14190 667 aaPredicted RBP12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 SGSM1Q2NKQ1 1148 aa12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 EML3Q32P44 896 aa12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 TRIM68Q6AZZ1 485 aa12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 FSTL4Q6MZW2 842 aa12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 UNC93AQ86WB7 457 aa12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 GRAMD1CQ8IYS0 662 aa12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 NUP93Q8N1F7 819 aa12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 DCLK2Q8N568 766 aa12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 CAMKK1Q8N5S9 505 aa12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 ARL14EPQ8N8R7 260 aaPredicted RBP12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 TTC8Q8TAM2 541 aa12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 SH3RF2Q8TEC5 729 aa12.91□□□□□ -0.34
SQSTM1-207ENST00000481335 ACDQ96AP0 544 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms