RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-222	ENST00000478095	CYFIP2	Q96F07	1278 aa		10.9	□□□□□ -0.66
HDAC6-222	ENST00000478095	KREMEN1	Q96MU8	473 aa		10.9	□□□□□ -0.66
HDAC6-222	ENST00000478095	KCNK16	Q96T55	309 aa		10.9	□□□□□ -0.66
HDAC6-222	ENST00000478095	HSD3B7	Q9H2F3	369 aa		10.9	□□□□□ -0.66
HDAC6-222	ENST00000478095	ATXN3L	Q9H3M9	355 aa		10.9	□□□□□ -0.66
HDAC6-222	ENST00000478095	SMOC2	Q9H3U7	446 aa		10.9	□□□□□ -0.66
HDAC6-222	ENST00000478095	SLITRK6	Q9H5Y7	841 aa		10.9	□□□□□ -0.66
HDAC6-222	ENST00000478095	IL21	Q9HBE4	155 aa		10.9	□□□□□ -0.66
HDAC6-222	ENST00000478095	UBE2T	Q9NPD8	197 aa	Predicted RBP	10.9	□□□□□ -0.66
HDAC6-222	ENST00000478095	EPS15L1	Q9UBC2	864 aa		10.9	□□□□□ -0.66
HDAC6-222	ENST00000478095	PCDHB4	Q9Y5E5	795 aa		10.9	□□□□□ -0.66
HDAC6-222	ENST00000478095	TCF20	Q9UGU0	1960 aa	Known RBP	10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	GTPBP10	A4D1E9	387 aa	Known RBP	10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	BEST1	O76090	585 aa		10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	NOL4	O94818	638 aa		10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	FAM200B	P0CF97	657 aa		10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	ATP1A3	P13637	1013 aa		10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	CD19	P15391	556 aa		10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	ZNF18	P17022	549 aa		10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	ACO1	P21399	889 aa	Known RBP	10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	PON1	P27169	355 aa		10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	MAP3K7CL	P57077	242 aa		10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	USP46	P62068	366 aa		10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	GCNT1	Q02742	428 aa		10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	DENND5B	Q6ZUT9	1274 aa		10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	GPIHBP1	Q8IV16	184 aa		10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	TTC39C	Q8N584	583 aa		10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	RBBP8NL	Q8NC74	664 aa	Predicted RBP	10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	ZMIZ2	Q8NF64	920 aa		10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	SMARCD1	Q96GM5	515 aa		10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	C8orf48	Q96LL4	319 aa		10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	ZSWIM3	Q96MP5	696 aa		10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	GCNA	Q96QF7	691 aa		10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	HNRNPAB	Q99729	332 aa	Known RBP	10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	SMO	Q99835	787 aa		10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	BPIFA3	Q9BQP9	254 aa		10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	LSM14B	Q9BX40	385 aa	Known RBP	10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	SIX2	Q9NPC8	291 aa		10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	DMAP1	Q9NPF5	467 aa	Predicted RBP	10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	AVEN	Q9NQS1	362 aa	Predicted RBP	10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	AJAP1	Q9UKB5	411 aa	Predicted RBP	10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	NUMBL	Q9Y6R0	609 aa		10.89	□□□□□ -0.67
HDAC6-222	ENST00000478095	SMTNL1	A8MU46	457 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	BECN2	A8MW95	431 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	RNF225	M0QZC1	329 aa	Predicted RBP	10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	TADA3	O75528	432 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	TPM2	P07951	284 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	KRT5	P13647	590 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	CDK11B	P21127	795 aa	Known RBP	10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	CDC25C	P30307	473 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	KLK7	P49862	253 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	COPB1	P53618	953 aa	Known RBP	10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	SLC5A3	P53794	718 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	MFAP3	P55082	362 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	KCNMA1	Q12791	1236 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	ARHGAP44	Q17R89	818 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	GOLGA7B	Q2TAP0	167 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	GPR158	Q5T848	1215 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	PARM1	Q6UWI2	310 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	CLEC20A	Q6ZU45	233 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	GPRIN1	Q7Z2K8	1008 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	TMEM150A	Q86TG1	271 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	LUZP1	Q86V48	1076 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	ANKRD20A12P	Q8NF67	263 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	SCAMP5	Q8TAC9	235 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	FGF14	Q92915	247 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	SPATA17	Q96L03	361 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	KXD1	Q9BQD3	176 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	RPP25	Q9BUL9	199 aa	Known RBP	10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	DNAI2	Q9GZS0	605 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	KCNK12	Q9HB15	430 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	CBX8	Q9HC52	389 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	APEX2	Q9UBZ4	518 aa		10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	LIMA1	Q9UHB6	759 aa	Known RBP	10.88	□□□□□ -0.67
HDAC6-222	ENST00000478095	TTC28	Q96AY4	2481 aa		10.87	□□□□□ -0.67
HDAC6-222	ENST00000478095	MUC3A	Q02505	3323 aa		10.87	□□□□□ -0.67
HDAC6-222	ENST00000478095	ANHX	E9PGG2	379 aa		10.87	□□□□□ -0.67
HDAC6-222	ENST00000478095	MICAL2	O94851	1124 aa		10.87	□□□□□ -0.67
HDAC6-222	ENST00000478095	FGF19	O95750	216 aa		10.87	□□□□□ -0.67
HDAC6-222	ENST00000478095	F11	P03951	625 aa		10.87	□□□□□ -0.67
HDAC6-222	ENST00000478095	PNMA6A	P0CW24	399 aa	Predicted RBP	10.87	□□□□□ -0.67
HDAC6-222	ENST00000478095	NPR3	P17342	541 aa		10.87	□□□□□ -0.67
HDAC6-222	ENST00000478095	BRD2	P25440	801 aa	Known RBP	10.87	□□□□□ -0.67
HDAC6-222	ENST00000478095	USP8	P40818	1118 aa		10.87	□□□□□ -0.67
HDAC6-222	ENST00000478095	PLCB2	Q00722	1185 aa		10.87	□□□□□ -0.67
HDAC6-222	ENST00000478095	HTR4	Q13639	388 aa		10.87	□□□□□ -0.67
HDAC6-222	ENST00000478095	RAPGEF1	Q13905	1077 aa		10.87	□□□□□ -0.67
HDAC6-222	ENST00000478095	IQCB1	Q15051	598 aa		10.87	□□□□□ -0.67
HDAC6-222	ENST00000478095	PTPN21	Q16825	1174 aa		10.87	□□□□□ -0.67
HDAC6-222	ENST00000478095	ARHGAP15	Q53QZ3	475 aa		10.87	□□□□□ -0.67
HDAC6-222	ENST00000478095	SGO2	Q562F6	1265 aa		10.87	□□□□□ -0.67
HDAC6-222	ENST00000478095	FAM78A	Q5JUQ0	283 aa		10.87	□□□□□ -0.67
HDAC6-222	ENST00000478095	FKBP15	Q5T1M5	1219 aa		10.87	□□□□□ -0.67
HDAC6-222	ENST00000478095	TXNDC8	Q6A555	127 aa		10.87	□□□□□ -0.67
HDAC6-222	ENST00000478095	APTX	Q7Z2E3	356 aa	Known RBP	10.87	□□□□□ -0.67
HDAC6-222	ENST00000478095	NUP93	Q8N1F7	819 aa		10.87	□□□□□ -0.67
HDAC6-222	ENST00000478095	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	10.87	□□□□□ -0.67
HDAC6-222	ENST00000478095	TFAP2B	Q92481	460 aa		10.87	□□□□□ -0.67
HDAC6-222	ENST00000478095	TRMT2B	Q96GJ1	504 aa	Known RBP	10.87	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms