RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 MLLT6P55198 1093 aaPredicted RBP16.76■□□□□ 0.27
CCDC88B-205ENST00000472524 DLG4P78352 724 aa16.76■□□□□ 0.27
CCDC88B-205ENST00000472524 LMNB2Q03252 620 aa16.76■□□□□ 0.27
CCDC88B-205ENST00000472524 NCOA4Q13772 614 aa16.76■□□□□ 0.27
CCDC88B-205ENST00000472524 BECN1Q14457 450 aa16.76■□□□□ 0.27
CCDC88B-205ENST00000472524 PON2Q15165 354 aa16.76■□□□□ 0.27
CCDC88B-205ENST00000472524 TRIM68Q6AZZ1 485 aa16.76■□□□□ 0.27
CCDC88B-205ENST00000472524 C1orf228Q6PIY5 440 aa16.76■□□□□ 0.27
CCDC88B-205ENST00000472524 RALGPS2Q86X27 583 aaPredicted RBP16.76■□□□□ 0.27
CCDC88B-205ENST00000472524 RIN3Q8TB24 985 aa16.76■□□□□ 0.27
CCDC88B-205ENST00000472524 C2orf42Q9NWW7 574 aa16.76■□□□□ 0.27
CCDC88B-205ENST00000472524 GMEB2Q9UKD1 530 aa16.76■□□□□ 0.27
CCDC88B-205ENST00000472524 MAPK8IP1Q9UQF2 711 aa16.76■□□□□ 0.27
CCDC88B-205ENST00000472524 FRMD4BQ9Y2L6 1034 aa16.76■□□□□ 0.27
CCDC88B-205ENST00000472524 TRAV19A0A0A6YYK7 116 aa16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 CHURC1-FNTBB4DL54 471 aa16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 F8VP50 259 aa16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 CLDN5O00501 218 aa16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 TRIM66O15016 1216 aa16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 RHOBTB3O94955 611 aa16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 ZNF202O95125 648 aa16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 KIF20AO95235 890 aa16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 VNN1O95497 513 aa16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 C4BPAP04003 597 aaKnown RBP16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 HOXC13P31276 330 aa16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 FNTBP49356 437 aa16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 CDH8P55286 799 aa16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 CLDN10P78369 228 aa16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 SPEM2Q0P670 501 aa16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 SRSF5Q13243 272 aaKnown RBP16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 LRRC32Q14392 662 aa16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 ITPRIPL2Q3MIP1 535 aa16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 ZNF667Q5HYK9 610 aa16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 DENND5BQ6ZUT9 1274 aa16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 B3GALNT2Q8NCR0 500 aa16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 SPATA17Q96L03 361 aa16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 SLC22A12Q96S37 553 aa16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 CYP2S1Q96SQ9 504 aa16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 ZNF518BQ9C0D4 1074 aa16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 EBF3Q9H4W6 596 aa16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 HPS4Q9NQG7 708 aa16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 CDV3Q9UKY7 258 aaKnown RBP16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 RALGAPA1Q6GYQ0 2036 aa16.75■□□□□ 0.27
CCDC88B-205ENST00000472524 C2orf78A6NCI8 922 aa16.74■□□□□ 0.27
CCDC88B-205ENST00000472524 SOBPA7XYQ1 873 aa16.74■□□□□ 0.27
CCDC88B-205ENST00000472524 HRO43593 1189 aa16.74■□□□□ 0.27
CCDC88B-205ENST00000472524 FAM163BP0C2L3 166 aa16.74■□□□□ 0.27
CCDC88B-205ENST00000472524 USP17L7P0C7H9 530 aa16.74■□□□□ 0.27
CCDC88B-205ENST00000472524 ARSAP15289 507 aa16.74■□□□□ 0.27
CCDC88B-205ENST00000472524 NR2F2P24468 414 aa16.74■□□□□ 0.27
CCDC88B-205ENST00000472524 CACNA2D1P54289 1103 aa16.74■□□□□ 0.27
CCDC88B-205ENST00000472524 USP46P62068 366 aa16.74■□□□□ 0.27
CCDC88B-205ENST00000472524 IFRD2Q12894 506 aaPredicted RBP16.74■□□□□ 0.27
CCDC88B-205ENST00000472524 ZNF268Q14587 947 aaPredicted RBP16.74■□□□□ 0.27
CCDC88B-205ENST00000472524 KCNB1Q14721 858 aa16.74■□□□□ 0.27
CCDC88B-205ENST00000472524 CC2D1AQ6P1N0 951 aaPredicted RBP16.74■□□□□ 0.27
CCDC88B-205ENST00000472524 PRR23BQ6ZRT6 265 aa16.74■□□□□ 0.27
CCDC88B-205ENST00000472524 SPEM1Q8N4L4 309 aa16.74■□□□□ 0.27
CCDC88B-205ENST00000472524 ARL14EPQ8N8R7 260 aaPredicted RBP16.74■□□□□ 0.27
CCDC88B-205ENST00000472524 TMEM174Q8WUU8 243 aa16.74■□□□□ 0.27
CCDC88B-205ENST00000472524 ELOVL4Q9GZR5 314 aa16.74■□□□□ 0.27
CCDC88B-205ENST00000472524 VRTNQ9H8Y1 702 aa16.74■□□□□ 0.27
CCDC88B-205ENST00000472524 RAB23Q9ULC3 237 aa16.74■□□□□ 0.27
CCDC88B-205ENST00000472524 PRR5-ARHGAP8B1AHC4 643 aa16.73■□□□□ 0.27
CCDC88B-205ENST00000472524 K7ESF4 209 aa16.73■□□□□ 0.27
CCDC88B-205ENST00000472524 SDHBP21912 280 aa16.73■□□□□ 0.27
CCDC88B-205ENST00000472524 PIK3CAP42336 1068 aa16.73■□□□□ 0.27
CCDC88B-205ENST00000472524 ARHGAP8P85298 464 aa16.73■□□□□ 0.27
CCDC88B-205ENST00000472524 FAM160A1Q05DH4 1040 aa16.73■□□□□ 0.27
CCDC88B-205ENST00000472524 RUNX3Q13761 415 aa16.73■□□□□ 0.27
CCDC88B-205ENST00000472524 MTF1Q14872 753 aa16.73■□□□□ 0.27
CCDC88B-205ENST00000472524 ZACNQ401N2 412 aa16.73■□□□□ 0.27
CCDC88B-205ENST00000472524 LAIR1Q6GTX8 287 aa16.73■□□□□ 0.27
CCDC88B-205ENST00000472524 TMC2Q8TDI7 906 aa16.73■□□□□ 0.27
CCDC88B-205ENST00000472524 C8orf48Q96LL4 319 aa16.73■□□□□ 0.27
CCDC88B-205ENST00000472524 FAM83CQ9BQN1 747 aa16.73■□□□□ 0.27
CCDC88B-205ENST00000472524 MED10Q9BTT4 135 aa16.73■□□□□ 0.27
CCDC88B-205ENST00000472524 B3GNT5Q9BYG0 378 aa16.73■□□□□ 0.27
CCDC88B-205ENST00000472524 SDCBP2Q9H190 292 aa16.73■□□□□ 0.27
CCDC88B-205ENST00000472524 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.73■□□□□ 0.27
CCDC88B-205ENST00000472524 TMEM30AQ9NV96 361 aa16.73■□□□□ 0.27
CCDC88B-205ENST00000472524 TRPM5Q9NZQ8 1165 aa16.73■□□□□ 0.27
CCDC88B-205ENST00000472524 TRAF3IP3Q9Y228 551 aa16.73■□□□□ 0.27
CCDC88B-205ENST00000472524 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.73■□□□□ 0.27
CCDC88B-205ENST00000472524 SPAG17Q6Q759 2223 aa16.73■□□□□ 0.27
CCDC88B-205ENST00000472524 KIAA1549LQ6ZVL6 1849 aa16.73■□□□□ 0.27
CCDC88B-205ENST00000472524 DCDC2BA2VCK2 349 aa16.72■□□□□ 0.27
CCDC88B-205ENST00000472524 OTOL1A6NHN0 477 aaPredicted RBP16.72■□□□□ 0.27
CCDC88B-205ENST00000472524 ABL1P00519 1130 aa16.72■□□□□ 0.27
CCDC88B-205ENST00000472524 P4HA1P13674 534 aa16.72■□□□□ 0.27
CCDC88B-205ENST00000472524 VAMP7P51809 220 aa16.72■□□□□ 0.27
CCDC88B-205ENST00000472524 USP4Q13107 963 aa16.72■□□□□ 0.27
CCDC88B-205ENST00000472524 SIM2Q14190 667 aaPredicted RBP16.72■□□□□ 0.27
CCDC88B-205ENST00000472524 ZNF77Q15935 545 aa16.72■□□□□ 0.27
CCDC88B-205ENST00000472524 DGKKQ5KSL6 1271 aa16.72■□□□□ 0.27
CCDC88B-205ENST00000472524 HEATR6Q6AI08 1181 aaKnown RBP16.72■□□□□ 0.27
CCDC88B-205ENST00000472524 SPOPLQ6IQ16 392 aa16.72■□□□□ 0.27
CCDC88B-205ENST00000472524 SV2AQ7L0J3 742 aa16.72■□□□□ 0.27
CCDC88B-205ENST00000472524 GUF1Q8N442 669 aaKnown RBP16.72■□□□□ 0.27
CCDC88B-205ENST00000472524 CCDC34Q96HJ3 373 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms